View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4990-Insertion-3 (Length: 206)
Name: NF4990-Insertion-3
Description: NF4990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4990-Insertion-3 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 31648423 - 31648223
Alignment:
| Q |
6 |
catattctccattatatttttggtagtgtaaattaattaacaccttctataactagtaattagctaggctaaataaggtattaatggatatgaagaggaa |
105 |
Q |
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| T |
31648423 |
catattctccattatatttttggtagtgtaaattaattaacaccttctataactagtaactagctaggctaaataaggtattaatggatatgaagaggaa |
31648324 |
T |
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| Q |
106 |
aaagagggatatggccttttattcaacttgataaccttcctacttgcaaatttaaaaactgttcccatttggaagtatatagacaaaagttcctagtcag |
205 |
Q |
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| T |
31648323 |
aaggagggatatggccttttattcaacttgttaaccttcctacttgcaaatttaaaaactgttcccatttggaagtatatagacaaaagttcctagtcag |
31648224 |
T |
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| Q |
206 |
g |
206 |
Q |
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| T |
31648223 |
g |
31648223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 197
Target Start/End: Complemental strand, 31655360 - 31655254
Alignment:
| Q |
89 |
atggatatgaagag-gaaaaagagggatatggccttttattcaacttgataaccttcctacttgcaaatttaaaaactgttcccatttggaagtatatag |
187 |
Q |
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| T |
31655360 |
atggatatgaagagagaaaaagaggtgcacgaccttttattcaacttggta--cttcctacttgcaaatttaaaatttgatcccatttgg-agtatttag |
31655264 |
T |
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| Q |
188 |
acaaaagttc |
197 |
Q |
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| T |
31655263 |
acaaaagttc |
31655254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 31663155 - 31663195
Alignment:
| Q |
22 |
tttttggtagtgtaaattaattaacacctt-ctataactag |
61 |
Q |
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| T |
31663155 |
tttttggtagtgtaaattaattaacactttgctataactag |
31663195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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