View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4990-Insertion-4 (Length: 75)

Name: NF4990-Insertion-4
Description: NF4990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4990-Insertion-4
NF4990-Insertion-4
[»] chr2 (12 HSPs)
chr2 (8-75)||(2377200-2377267)
chr2 (8-71)||(9496017-9496080)
chr2 (8-65)||(12141701-12141758)
chr2 (8-65)||(19336961-19337018)
chr2 (8-71)||(9556437-9556500)
chr2 (8-71)||(45543141-45543203)
chr2 (7-65)||(11412865-11412922)
chr2 (9-71)||(26784409-26784471)
chr2 (8-65)||(26670925-26670982)
chr2 (8-71)||(21834705-21834768)
chr2 (8-71)||(31959672-31959735)
chr2 (8-71)||(37470201-37470264)
[»] chr3 (17 HSPs)
chr3 (8-71)||(45289159-45289222)
chr3 (8-71)||(49841767-49841830)
chr3 (8-65)||(36304123-36304180)
chr3 (16-71)||(19162663-19162718)
chr3 (24-71)||(39600765-39600812)
chr3 (28-71)||(46431767-46431810)
chr3 (8-71)||(50960705-50960768)
chr3 (24-70)||(26490467-26490513)
chr3 (8-62)||(29601052-29601106)
chr3 (9-71)||(30294190-30294252)
chr3 (8-50)||(44571599-44571641)
chr3 (17-71)||(49042087-49042141)
chr3 (9-60)||(6988063-6988113)
chr3 (8-71)||(19676149-19676212)
chr3 (8-71)||(40116536-40116599)
chr3 (28-71)||(41452828-41452871)
chr3 (24-75)||(53519728-53519778)
[»] chr7 (14 HSPs)
chr7 (8-65)||(28542012-28542069)
chr7 (8-71)||(38135281-38135344)
chr7 (8-71)||(40979996-40980059)
chr7 (9-71)||(21517449-21517511)
chr7 (8-54)||(37976403-37976449)
chr7 (8-64)||(1569174-1569230)
chr7 (8-71)||(24549756-24549819)
chr7 (8-71)||(28628001-28628064)
chr7 (9-71)||(12966167-12966229)
chr7 (5-71)||(32368402-32368468)
chr7 (8-49)||(5577555-5577596)
chr7 (8-75)||(32631712-32631778)
chr7 (8-71)||(36239864-36239927)
chr7 (8-71)||(45601627-45601690)
[»] chr5 (12 HSPs)
chr5 (8-70)||(12576928-12576990)
chr5 (10-71)||(14725669-14725730)
chr5 (8-71)||(14667922-14667985)
chr5 (9-64)||(17340505-17340560)
chr5 (28-71)||(28186863-28186906)
chr5 (11-54)||(41894234-41894277)
chr5 (8-54)||(418102-418148)
chr5 (8-65)||(13561454-13561511)
chr5 (17-65)||(36200886-36200934)
chr5 (28-71)||(5303595-5303638)
chr5 (8-71)||(23980095-23980158)
chr5 (30-65)||(32759733-32759768)
[»] chr4 (18 HSPs)
chr4 (8-70)||(31043224-31043286)
chr4 (8-64)||(25574982-25575038)
chr4 (8-71)||(26037573-26037636)
chr4 (8-71)||(45204907-45204970)
chr4 (10-64)||(27049247-27049301)
chr4 (8-65)||(30621269-30621326)
chr4 (8-49)||(34208337-34208378)
chr4 (8-61)||(55007907-55007960)
chr4 (17-65)||(31459151-31459199)
chr4 (28-71)||(20047586-20047629)
chr4 (8-71)||(21107143-21107206)
chr4 (17-52)||(26510558-26510593)
chr4 (24-71)||(28351710-28351757)
chr4 (19-54)||(28486089-28486124)
chr4 (8-71)||(28550523-28550586)
chr4 (8-71)||(39708584-39708647)
chr4 (8-71)||(49987559-49987622)
chr4 (8-71)||(51421881-51421944)
[»] chr1 (15 HSPs)
chr1 (29-71)||(8676954-8676996)
chr1 (17-65)||(36623961-36624009)
chr1 (8-63)||(10200374-10200429)
chr1 (8-71)||(40416522-40416585)
chr1 (29-71)||(8203223-8203265)
chr1 (10-71)||(3818926-3818987)
chr1 (8-65)||(4001523-4001580)
chr1 (8-64)||(43375666-43375722)
chr1 (8-63)||(6025764-6025819)
chr1 (8-71)||(7762505-7762568)
chr1 (8-71)||(29128934-29128997)
chr1 (8-67)||(29577211-29577269)
chr1 (8-71)||(39318280-39318343)
chr1 (8-71)||(41560380-41560443)
chr1 (8-71)||(52532684-52532747)
[»] scaffold0279 (1 HSPs)
scaffold0279 (28-71)||(17690-17733)
[»] chr8 (13 HSPs)
chr8 (8-51)||(29520820-29520863)
chr8 (8-71)||(30559844-30559907)
chr8 (8-71)||(33827825-33827888)
chr8 (8-71)||(35643674-35643737)
chr8 (8-54)||(490503-490549)
chr8 (9-71)||(28169543-28169605)
chr8 (8-53)||(16917352-16917397)
chr8 (31-68)||(35825547-35825584)
chr8 (8-65)||(45041384-45041440)
chr8 (8-60)||(12966382-12966434)
chr8 (8-52)||(43904733-43904777)
chr8 (12-71)||(16705898-16705957)
chr8 (8-71)||(17491722-17491785)
[»] chr6 (5 HSPs)
chr6 (8-71)||(43120-43183)
chr6 (8-71)||(9593776-9593839)
chr6 (12-64)||(5897615-5897667)
chr6 (9-65)||(14389230-14389286)
chr6 (8-71)||(31818682-31818745)
[»] scaffold0570 (1 HSPs)
scaffold0570 (8-65)||(1016-1073)


Alignment Details
Target: chr2 (Bit Score: 68; Significance: 4e-31; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-31
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 2377267 - 2377200
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatcttaggtc 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2377267 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatcttaggtc 2377200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 9496080 - 9496017
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| |||||||||||||||||  |||||||||||| | |||||||| |||||    
T  9496080 ctatcataaaccatatttggatccaactcattaacctctaaatctttctgaatagtttctctta 9496017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 12141758 - 12141701
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagttt 65  Q
    ||||||||||||||| |||||||||| |||||| ||||||| |||||  |||||||||    
T  12141758 ctatcatataccatatttggatccaagtcattaatctctaagtctttcctaatagttt 12141701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 19336961 - 19337018
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagttt 65  Q
    |||||||| |||||| || |||||||||||||| ||||||||||||| || |||||||    
T  19336961 ctatcataaaccatatttcgatccaactcattaatctctaaatctttctttatagttt 19337018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 9556437 - 9556500
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| ||||||  | |||||||||||||| || ||| |||||| ||||||||||||||||    
T  9556437 ctatcataaaccatatcttgatccaactcattaatcactagatctttcttaatagtttatctta 9556500  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 45543141 - 45543203
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| ||||||| |||||||||  ||||||||||||| ||||||||| |||||    
T  45543141 ctatcataaaccatatttggatcgaactcattac-ctctaaatcttttctaatagtttctctta 45543203  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 11412922 - 11412865
Alignment:
Q  7 actatcatataccatagttggatccaactcattattctctaaatcttttttaatagttt 65  Q
    ||||||||| |||||| ||||||||||||||||| ||||| |||||||  |||||||||    
T  11412922 actatcataaaccatatttggatccaactcattaatctct-aatctttcctaatagttt 11412865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 26784409 - 26784471
Alignment:
Q  9 tatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||||||||| ||  || |||||||||| |||||| |||||| |||||||||| |||||    
T  26784409 tatcatataccatatttctattcaactcattaatctctatatctttcttaatagtttctctta 26784471  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 26670982 - 26670925
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagttt 65  Q
    |||||||| | |||| || | |||||||||||| ||||||||||||| ||||||||||    
T  26670982 ctatcataaatcatattttggtccaactcattaatctctaaatctttcttaatagttt 26670925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 21834768 - 21834705
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||| | || |||||||||||||| ||| ||||| |||  |||||||||||||||    
T  21834768 ctatcataaaccaaatttagatccaactcattaatctataaatatttcctaatagtttatctta 21834705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 31959735 - 31959672
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| ||||||||||||||||   ||||||||| ||| |||| |||| |||||    
T  31959735 ctatcataaaccatatttggatccaactcattgacctctaaatcctttctaatggtttctctta 31959672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 37470201 - 37470264
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    ||||||||| ||||| || |||||||||||||| |||||| |||| |  ||||||||| |||||    
T  37470201 ctatcatatgccatatttcgatccaactcattaatctctagatctgtcctaatagtttctctta 37470264  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 45289159 - 45289222
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| ||||||||||||||||| |||||||||||||  ||||||||| |||||    
T  45289159 ctatcataaaccatatttggatccaactcattaatctctaaatctttcctaatagtttctctta 45289222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 49841830 - 49841767
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    ||||||||||||||| || |||||||||||||| ||| || |||||| |||||||||| |||||    
T  49841830 ctatcatataccatatttcgatccaactcattaatctttagatctttgttaatagtttctctta 49841767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 36304180 - 36304123
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagttt 65  Q
    |||||||| |||||| || |||||||||||||| |||||| |||||| ||||||||||    
T  36304180 ctatcataaaccatattttgatccaactcattaatctctagatctttcttaatagttt 36304123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 19162663 - 19162718
Alignment:
Q  16 taccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    ||||||| ||| ||||||||||||| |||||||||||||  ||||||||| |||||    
T  19162663 taccatacttgcatccaactcattaatctctaaatctttcctaatagtttctctta 19162718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 39600765 - 39600812
Alignment:
Q  24 ttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||||||||||||  |||||||||||| |||||||||| |||||    
T  39600765 ttggatccaactcattaacctctaaatctttcttaatagtttctctta 39600812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 46431767 - 46431810
Alignment:
Q  28 atccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    ||||||||||||| |||||| ||||||||||||||||| |||||    
T  46431767 atccaactcattaatctctagatcttttttaatagtttctctta 46431810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 50960705 - 50960768
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||| ||| |||||| ||||||||||||||||| |||||||| ||||  ||||||||| |||||    
T  50960705 ctatgatacaccatatttggatccaactcattaatctctaaacctttcctaatagtttctctta 50960768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 26490513 - 26490467
Alignment:
Q  24 ttggatccaactcattattctctaaatcttttttaatagtttatctt 70  Q
    ||||||| ||||||||| |||||||||||||| ||||||||| ||||    
T  26490513 ttggatcaaactcattagtctctaaatcttttctaatagtttctctt 26490467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 29601106 - 29601052
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatag 62  Q
    |||||||| || ||| ||| ||||||||||||| ||||||||||||| |||||||    
T  29601106 ctatcataaactatatttgaatccaactcattaatctctaaatctttcttaatag 29601052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 30294190 - 30294252
Alignment:
Q  9 tatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    ||||||| | |||| || |||||||||||||   || ||||||||||||||||||||||||||    
T  30294190 tatcataaatcatacttagatccaactcattgacctataaatcttttttaatagtttatctta 30294252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 44571641 - 44571599
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaat 50  Q
    |||||||| |||||| ||||||||||||||||| |||||||||    
T  44571641 ctatcataaaccatatttggatccaactcattaatctctaaat 44571599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 49042141 - 49042087
Alignment:
Q  17 accatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||| |||||||||||||||||  ||||||||||||  ||||||||| |||||    
T  49042141 accatatttggatccaactcattaacctctaaatctttcctaatagtttctctta 49042087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 6988113 - 6988063
Alignment:
Q  9 tatcatataccatagttggatccaactcattattctctaaatcttttttaat 60  Q
    |||||||||||||| ||  ||||||||||||| |||||| ||||||||||||    
T  6988113 tatcatataccata-ttctatccaactcattaatctctagatcttttttaat 6988063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 19676149 - 19676212
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| | |||| |||||||||||||||||  |||||||| |||  ||||||||| |||||    
T  19676149 ctatcatacagcatatttggatccaactcattaacctctaaatttttcctaatagtttctctta 19676212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 40116536 - 40116599
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| || | |||||||||||| ||||||||||| |  ||||||||| |||||    
T  40116536 ctatcataaaccatatttcggtccaactcattaatctctaaatctatcctaatagtttctctta 40116599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 41452828 - 41452871
Alignment:
Q  28 atccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    ||||||||||||| |||||| |||||| ||||||||||| ||||    
T  41452828 atccaactcattaatctctagatctttcttaatagtttaactta 41452871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 53519778 - 53519728
Alignment:
Q  24 ttggatccaactcattattctctaaatcttttttaatagtttatcttaggtc 75  Q
    ||||||||||||||||   |||||||||||||||||| |||| |||||||||    
T  53519778 ttggatccaactcattgacctctaaatcttttttaatggttt-tcttaggtc 53519728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.0000000000004; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 28542012 - 28542069
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagttt 65  Q
    |||||||| |||||||||  ||||||||||||| ||||||||||||| ||||||||||    
T  28542012 ctatcataaaccatagttcaatccaactcattaatctctaaatctttcttaatagttt 28542069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 38135281 - 38135344
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    ||||||||  ||||| || | |||||||||||| |||||||||||||||||||||||| |||||    
T  38135281 ctatcataacccatatttcggtccaactcattaatctctaaatcttttttaatagtttctctta 38135344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 40979996 - 40980059
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| ||||||||||||||||   ||||||||||||| ||||||||| |||||    
T  40979996 ctatcataaaccatatttggatccaactcattgacctctaaatcttttctaatagtttctctta 40980059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 21517449 - 21517511
Alignment:
Q  9 tatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    ||||||| | |||| |||||||||||| |||| ||||||||| |||||||||||||| |||||    
T  21517449 tatcataaatcatatttggatccaacttattaatctctaaatattttttaatagtttctctta 21517511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 37976449 - 37976403
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttt 54  Q
    |||||||| |||||| ||||||||||||||||| |||||||||||||    
T  37976449 ctatcataaaccatatttggatccaactcattaatctctaaatcttt 37976403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 1569230 - 1569174
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtt 64  Q
    |||||||| |||||| || |||||||||||||| |||||| |||||| |||||||||    
T  1569230 ctatcataaaccatattttgatccaactcattaatctctagatctttcttaatagtt 1569174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 24549756 - 24549819
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||| |||||||| ||  ||||||||||||| |||||| |||||| |||||||||| |||||    
T  24549756 ctatcaaataccatatttcaatccaactcattaatctctagatctttcttaatagtttctctta 24549819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 28628001 - 28628064
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||| | ||| ||||||||||||| |||||||||||||  ||||||||| |||||    
T  28628001 ctatcataaaccacatttgcatccaactcattaatctctaaatctttcctaatagtttctctta 28628064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 12966229 - 12966167
Alignment:
Q  9 tatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||||||||| ||  |||||| |||||| ||||||||| ||| |||||||||| |||||    
T  12966229 tatcatataccatatttctatccaaatcattaatctctaaatatttcttaatagtttctctta 12966167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 32368402 - 32368468
Alignment:
Q  5 acactatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||| ||||||||||||| || ||||||||||| || ||||||||||||  ||||||| || |||||    
T  32368402 acaccatcatataccatatttcgatccaactcactaatctctaaatcttccttaatagcttctctta 32368468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 5577555 - 5577596
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaa 49  Q
    |||||||| |||||| ||||||||||||||||| ||||||||    
T  5577555 ctatcataaaccatacttggatccaactcattagtctctaaa 5577596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 32631778 - 32631712
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatcttaggtc 75  Q
    |||||| | |||||| ||||||||||||||||   ||||||||||||| |||| |||| |||||||||    
T  32631778 ctatcaaaaaccatatttggatccaactcattgacctctaaatcttttctaatggttt-tcttaggtc 32631712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 36239864 - 36239927
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| | |||| ||||||||||||| ||| ||||||||| |||  ||||||||| |||||    
T  36239864 ctatcataaagcatatttggatccaactcgttaatctctaaatttttcctaatagtttctctta 36239927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 45601690 - 45601627
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| | |||| || |||||||||||||| |||||| |||||| ||||| |||| |||||    
T  45601690 ctatcataaatcatattttgatccaactcattaatctctagatctttcttaatggtttctctta 45601627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 12576928 - 12576990
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctt 70  Q
    ||||||||||||||| ||  || |||||||||| |||||| |||||| |||||||||||||||    
T  12576928 ctatcatataccatatttctattcaactcattaatctctagatctttcttaatagtttatctt 12576990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 14725730 - 14725669
Alignment:
Q  10 atcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||| |||||| || ||||||||||||||  || |||||||||| |||||||||||||||    
T  14725730 atcataaaccatattttgatccaactcattaacctttaaatcttttataatagtttatctta 14725669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 14667985 - 14667922
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| ||||||||||||||||| |||||| |||||| ||| ||| || |||||    
T  14667985 ctatcataaaccatacttggatccaactcattaatctctagatctttcttagtagcttctctta 14667922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 17340505 - 17340560
Alignment:
Q  9 tatcatataccatagttggatccaactcattattctctaaatcttttttaatagtt 64  Q
    ||||||| |||||| ||||||| |||||||||  |||||||||||| |||||||||    
T  17340505 tatcataaaccatatttggatcaaactcattaacctctaaatctttcttaatagtt 17340560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 28186863 - 28186906
Alignment:
Q  28 atccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    ||||||||||||| ||||||||||||| |||||||||| |||||    
T  28186863 atccaactcattaatctctaaatctttcttaatagtttctctta 28186906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 41894277 - 41894234
Alignment:
Q  11 tcatataccatagttggatccaactcattattctctaaatcttt 54  Q
    ||||| |||||| ||||||||||||||||| |||||||||||||    
T  41894277 tcataaaccatatttggatccaactcattaatctctaaatcttt 41894234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 418102 - 418148
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttt 54  Q
    |||||||| |||| | ||||||||||||||||| |||||||||||||    
T  418102 ctatcataaaccacatttggatccaactcattaatctctaaatcttt 418148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 13561454 - 13561511
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagttt 65  Q
    |||||| | |||||||||||||||||||||||   ||||||||||||| |||| ||||    
T  13561454 ctatcaaaaaccatagttggatccaactcattgacctctaaatcttttctaatggttt 13561511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 36200934 - 36200886
Alignment:
Q  17 accatagttggatccaactcattattctctaaatcttttttaatagttt 65  Q
    |||||| |||||||||||||||||  ||||| ||||||| |||||||||    
T  36200934 accatatttggatccaactcattaacctctatatcttttataatagttt 36200886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 5303638 - 5303595
Alignment:
Q  28 atccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||||||||  |||||||||||||| |||||||| |||||    
T  5303638 atccaactcattaaactctaaatctttttcaatagtttctctta 5303595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 23980158 - 23980095
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| || |||||||||||||| ||| |||||| || | |||||||| |||||    
T  23980158 ctatcataaaccatatttagatccaactcattaatctataaatcattctcaatagtttctctta 23980095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 32759768 - 32759733
Alignment:
Q  30 ccaactcattattctctaaatcttttttaatagttt 65  Q
    ||||||||||||||| ||||||||| ||||||||||    
T  32759768 ccaactcattattctataaatctttcttaatagttt 32759733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 31043286 - 31043224
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctt 70  Q
    |||||| | |||||| ||||||||||||||||| |||||||||||||  ||||||||| ||||    
T  31043286 ctatcacaaaccatatttggatccaactcattaatctctaaatctttcctaatagtttctctt 31043224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 25575038 - 25574982
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtt 64  Q
    |||||||| |||||| || |||||||||||||| |||||| |||||| |||||||||    
T  25575038 ctatcataaaccatatttcgatccaactcattaatctctagatctttcttaatagtt 25574982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 26037573 - 26037636
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| ||||||||||||||||   ||||||||||||  ||||||||| |||||    
T  26037573 ctatcataaaccatatttggatccaactcattcacctctaaatctttcctaatagtttctctta 26037636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 45204907 - 45204970
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| |||||||||||| ||||  ||||||||||||  ||||||||| |||||    
T  45204907 ctatcataaaccatatttggatccaacttattaaactctaaatctttcctaatagtttctctta 45204970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 27049247 - 27049301
Alignment:
Q  10 atcatataccatagttggatccaactcattattctctaaatcttttttaatagtt 64  Q
    |||||| |||||| ||||| ||||||||||| ||| ||||||||| |||||||||    
T  27049247 atcataaaccatatttggaaccaactcattaatctataaatctttcttaatagtt 27049301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 30621269 - 30621326
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagttt 65  Q
    |||||||| |||||| || | |||||| ||||| ||||||||||||| ||||||||||    
T  30621269 ctatcataaaccatatttcggtccaacacattaatctctaaatctttcttaatagttt 30621326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 34208337 - 34208378
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaa 49  Q
    |||||||| |||||| ||||||||||||||||| ||||||||    
T  34208337 ctatcataaaccatatttggatccaactcattaatctctaaa 34208378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 55007960 - 55007907
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaata 61  Q
    |||||||| |||||| || | |||||||||||| ||||||||||||| ||||||    
T  55007960 ctatcataaaccatatttcggtccaactcattaatctctaaatctttcttaata 55007907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 31459199 - 31459151
Alignment:
Q  17 accatagttggatccaactcattattctctaaatcttttttaatagttt 65  Q
    |||||| | ||||||||||||||| |||||||||||||  |||||||||    
T  31459199 accatattgggatccaactcattaatctctaaatctttcctaatagttt 31459151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 20047629 - 20047586
Alignment:
Q  28 atccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    ||||||||||||| |||||| ||||| ||||||||||| |||||    
T  20047629 atccaactcattaatctctagatcttctttaatagtttctctta 20047586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 21107206 - 21107143
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| |||||||||||| |||| || ||||| ||||  ||||||||| |||||    
T  21107206 ctatcataaaccatatttggatccaactaattaatcactaaaactttcctaatagtttctctta 21107143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 26510593 - 26510558
Alignment:
Q  17 accatagttggatccaactcattattctctaaatct 52  Q
    |||||| ||||||||||||||||| |||||||||||    
T  26510593 accatatttggatccaactcattaatctctaaatct 26510558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 28351757 - 28351710
Alignment:
Q  24 ttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||||||||| || |||||||||||||  ||||||||| |||||    
T  28351757 ttggatccaactcaataatctctaaatctttcgtaatagtttctctta 28351710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 28486124 - 28486089
Alignment:
Q  19 catagttggatccaactcattattctctaaatcttt 54  Q
    |||| ||||||||||||||||| |||||||||||||    
T  28486124 catatttggatccaactcattaatctctaaatcttt 28486089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 28550523 - 28550586
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||| | |||||| ||||||| |||||||||  ||||||||||||  ||||||||| |||||    
T  28550523 ctatcaaaaaccatatttggatcaaactcattaacctctaaatctttcctaatagtttctctta 28550586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 39708647 - 39708584
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| ||||||||||||||||   ||||||||| ||| |||| |||| |||||    
T  39708647 ctatcataaaccatatttggatccaactcattgacctctaaatcctttctaatggtttctctta 39708584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 49987622 - 49987559
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||  |||||||||||||||| ||||||  |||| || ||||| |||||||||| |||||    
T  49987622 ctatcatgaaccatagttggatccatctcatttatctccaagtctttcttaatagtttctctta 49987559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 51421944 - 51421881
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||  |||||||||| ||||||  ||||||||||||  ||||||||| |||||    
T  51421944 ctatcataaaccatttttggatccaattcattaacctctaaatctttcctaatagtttctctta 51421881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 8676954 - 8676996
Alignment:
Q  29 tccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||||||| |||||||||||||||||||||||| |||||    
T  8676954 tccaactcattaatctctaaatcttttttaatagtttctctta 8676996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 36623961 - 36624009
Alignment:
Q  17 accatagttggatccaactcattattctctaaatcttttttaatagttt 65  Q
    |||||| |||||||||||||||||  ||||||||||||| |||||||||    
T  36623961 accatatttggatccaactcattagcctctaaatcttttctaatagttt 36624009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 10200374 - 10200429
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagt 63  Q
    |||||||| |||||| |||||||||||||||   |||||||||||||| |||||||    
T  10200374 ctatcataaaccatatttggatccaactcatcgatctctaaatcttttctaatagt 10200429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 40416585 - 40416522
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| || |||||||||||||| ||| || |||||| |||||||||| |||||    
T  40416585 ctatcataaaccatatttcgatccaactcattaatctatagatctttcttaatagtttgtctta 40416522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 8203223 - 8203265
Alignment:
Q  29 tccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||||||| |||||| ||||||||||||||||| |||||    
T  8203223 tccaactcattaatctctagatcttttttaatagtttctctta 8203265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 3818926 - 3818987
Alignment:
Q  10 atcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||| |||||| ||  || |||||||||| ||||||||||||| |||||||||| |||||    
T  3818926 atcataaaccatatttctattcaactcattaatctctaaatctttcttaatagtttctctta 3818987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 4001523 - 4001580
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagttt 65  Q
    |||||| | |||||| ||||||||||||||||   |||||||||||||||||| ||||    
T  4001523 ctatcaaaaaccatatttggatccaactcattgacctctaaatcttttttaatggttt 4001580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 43375666 - 43375722
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtt 64  Q
    |||||||  |||||| || | |||||||||||| ||||||||||||| |||||||||    
T  43375666 ctatcatgaaccatatttcggtccaactcattaatctctaaatctttcttaatagtt 43375722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 6025819 - 6025764
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagt 63  Q
    |||||| |||||||| ||  ||||||||||||| |||||| |||||||||| ||||    
T  6025819 ctatcagataccatatttctatccaactcattaatctctagatcttttttactagt 6025764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 7762505 - 7762568
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||| ||| |||||| || ||||||||||||||   |||||||||||| ||||||||| |||||    
T  7762505 ctattataaaccatatttagatccaactcattaacatctaaatcttttctaatagtttctctta 7762568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 29128997 - 29128934
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| ||||||||||||  |||  ||||||||||||  ||||||||| |||||    
T  29128997 ctatcataaaccatatttggatccaacttgttaacctctaaatctttcctaatagtttctctta 29128934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 29577211 - 29577269
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttat 67  Q
    |||||||| |||||| || |||||| ||||||| |||||| |||||| ||||||||||||    
T  29577211 ctatcata-accatattttgatccagctcattaatctctagatctttcttaatagtttat 29577269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 39318343 - 39318280
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| ||||||||||||||||   ||||||||| ||| |||| |||| |||||    
T  39318343 ctatcataaaccatatttggatccaactcattgacctctaaatcctttctaatggtttctctta 39318280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 41560443 - 41560380
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    ||||||||  ||||| ||||||||||||||||| ||||||||| | |  ||||||||| |||||    
T  41560443 ctatcataacccatatttggatccaactcattaatctctaaatgtatcctaatagtttctctta 41560380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 52532684 - 52532747
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| || | |||||||||||| | |||||||||||  ||||||||| |||||    
T  52532684 ctatcataaaccatattttgttccaactcattaatttctaaatctttcctaatagtttctctta 52532747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 32; Significance: 0.000000001; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 17733 - 17690
Alignment:
Q  28 atccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    ||||||| ||||| |||||||||||||||||||||||| |||||    
T  17733 atccaacccattaatctctaaatcttttttaatagtttctctta 17690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 29520863 - 29520820
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatc 51  Q
    |||||||| |||||| ||||||||||||||||| ||||||||||    
T  29520863 ctatcataaaccatatttggatccaactcattaatctctaaatc 29520820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 30559907 - 30559844
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| ||||||  |||||||||||||||| |||||||||||||  | ||||||| |||||    
T  30559907 ctatcataaaccatatatggatccaactcattaatctctaaatctttcctgatagtttctctta 30559844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 33827825 - 33827888
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| || ||||||| |||||| ||| ||||| |||||||||||||| |||||    
T  33827825 ctatcataaaccatatttagatccaattcattaatctataaatattttttaatagtttctctta 33827888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 35643674 - 35643737
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| || |||||||||||||| |||||| |||||| |||||| ||| |||||    
T  35643674 ctatcataaaccatatttcgatccaactcattaatctctagatctttcttaataatttctctta 35643737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 490549 - 490503
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttt 54  Q
    |||||||| |||||| ||||||||||||||| | |||||||||||||    
T  490549 ctatcataaaccatatttggatccaactcatcaatctctaaatcttt 490503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 28169605 - 28169543
Alignment:
Q  9 tatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    ||||||| |||||| ||| ||||||||||||| |||| ||||||||  ||||||||| |||||    
T  28169605 tatcataaaccatatttgaatccaactcattaatctcaaaatctttcctaatagtttctctta 28169543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 16917397 - 16917352
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatctt 53  Q
    ||||||||||||||| ||  ||||||||||||| ||||||||||||    
T  16917397 ctatcatataccatatttctatccaactcattaatctctaaatctt 16917352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 35825547 - 35825584
Alignment:
Q  31 caactcattattctctaaatcttttttaatagtttatc 68  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  35825547 caactcattagtctctaaatcttttctaatagtttatc 35825584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 45041384 - 45041440
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagttt 65  Q
    |||||||| |||||| |||||||||||||||||  ||||||||||||  |||||||||    
T  45041384 ctatcataaaccata-ttggatccaactcattaacctctaaatctttcctaatagttt 45041440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 12966382 - 12966434
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaat 60  Q
    |||||||| |||||| ||| || |||||||||| ||||||||||||| |||||    
T  12966382 ctatcataaaccatatttgaattcaactcattaatctctaaatctttcttaat 12966434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 43904733 - 43904777
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatct 52  Q
    |||||||| |||||| || |||||||||||||| |||||||||||    
T  43904733 ctatcataaaccatatttagatccaactcattaatctctaaatct 43904777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 16705957 - 16705898
Alignment:
Q  12 catataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    ||||||||||| || |||||||||||||| ||||||  | ||| |||||||||| |||||    
T  16705957 catataccatatttcgatccaactcattaatctctagctttttcttaatagtttctctta 16705898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 17491722 - 17491785
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| || | |||||||||||| |||| || ||||| |||||||||| |||||    
T  17491722 ctatcataaaccatattttggtccaactcattaatctccaagtctttcttaatagtttctctta 17491785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 43120 - 43183
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| || ||| || |||||||||||||| |||||| |||||| |||||||||| |||||    
T  43120 ctatcataaactatattttgatccaactcattactctctagatctttattaatagtttctctta 43183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 9593776 - 9593839
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| | ||||||||||||||| ||||||| |||||  ||||||||| |||||    
T  9593776 ctatcataaaccatattgggatccaactcattaatctctaagtctttcctaatagtttctctta 9593839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 5897667 - 5897615
Alignment:
Q  12 catataccatagttggatccaactcattattctctaaatcttttttaatagtt 64  Q
    ||||||||||| || |||||||| ||||| | |||||||||||| ||||||||    
T  5897667 catataccatattttgatccaacacattaatatctaaatcttttctaatagtt 5897615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 14389230 - 14389286
Alignment:
Q  9 tatcatataccatagttggatccaactcattattctctaaatcttttttaatagttt 65  Q
    ||||||| |||||| ||||||| |||| |||| ||||||||||||| |||| |||||    
T  14389230 tatcataaaccatatttggatctaacttattaatctctaaatctttcttaagagttt 14389286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 31818745 - 31818682
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagtttatctta 71  Q
    |||||||| |||||| || |||||||||||||| |||| ||| ||||  ||||||||| |||||    
T  31818745 ctatcataaaccatactttgatccaactcattaatctccaaacctttcctaatagtttctctta 31818682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 1016 - 1073
Alignment:
Q  8 ctatcatataccatagttggatccaactcattattctctaaatcttttttaatagttt 65  Q
    |||||||| |||| | ||||||||||||||||   |||||||||||||||||| ||||    
T  1016 ctatcatacaccaaatttggatccaactcattgacctctaaatcttttttaatggttt 1073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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