View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4990_high_1 (Length: 497)

Name: NF4990_high_1
Description: NF4990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4990_high_1
NF4990_high_1
[»] chr4 (4 HSPs)
chr4 (223-479)||(50096415-50096671)
chr4 (1-154)||(50096001-50096154)
chr4 (185-245)||(50096156-50096216)
chr4 (203-260)||(25209794-25209852)
[»] chr5 (1 HSPs)
chr5 (220-264)||(10301388-10301432)
[»] chr6 (1 HSPs)
chr6 (220-273)||(35107978-35108031)
[»] chr3 (2 HSPs)
chr3 (215-264)||(53506214-53506263)
chr3 (227-273)||(20494018-20494064)
[»] chr2 (3 HSPs)
chr2 (227-273)||(2579087-2579133)
chr2 (224-273)||(43821132-43821181)
chr2 (228-264)||(35394605-35394641)
[»] chr7 (2 HSPs)
chr7 (223-264)||(13636513-13636554)
chr7 (223-264)||(13697700-13697741)
[»] chr1 (1 HSPs)
chr1 (223-251)||(6108854-6108882)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 223 - 479
Target Start/End: Original strand, 50096415 - 50096671
Alignment:
Q  223 gagaaaaaactaacataataattaacatactagcatttatcactgaaaaaagaatgaattggtttgactgccttgacatcacatgattttgcaatcctat 322  Q
    |||||||||||||||||| |||||||||| ||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  50096415 gagaaaaaactaacataacaattaacatattag-atttatcactgaaaaaaaattgaattggtttgactgccttgacatcacatgattttgcaatcctat 50096513  T
Q  323 gcttgtatgtagtatcttggcggcaatttggacctcccgtgcttt-gaagagtgataaatcaaaattgctacacacatcataacaaagaaaaggaaataa 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50096514 gcttgtatgtagtatcttggcggcaatttggacctcccgtgcttttgaagagtgataaatcaaaattgctacacacatcataacaaagaaaaggaaataa 50096613  T
Q  422 cttacaccatgtttactccatgaaaacgtttttattttattttgtcaagtagtttaat 479  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  50096614 cttacactatgtttactccatgaaaacgtttttattttattttgtcaagtaatttaat 50096671  T

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Target: chr4; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 50096001 - 50096154
Alignment:
Q  1 aagtgttaataaagttgagtttagtgattaaaacttggtgtcctaatccaatagttctcacaattttgactccctttagtttagtggttaactcagcctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50096001 aagtgttaataaagttgagtttagtgattaaaacttggtgtcctaatccaatagttctcacaattttgactccctttagtttagtggttaactcagcctg 50096100  T
Q  101 gtgtgttgctctctcatagcccctaatccaatagaaaattatctcttggtaggt 154  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50096101 gtgtgttgctctctcatagcccctaatccaatagaaaattatcttttggtaggt 50096154  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 50096156 - 50096216
Alignment:
Q  185 ttatgaaatctaactttgagggttgacgttttgaaaaggagaaaaaactaacataataatt 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  50096156 ttatgaaatctaactttgagggttgacgttttgaaaaggagaaaagactaacataacaatt 50096216  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 25209794 - 25209852
Alignment:
Q  203 agggttgacgttttgaaaaggagaaaaa-actaacataataattaacatactagcattt 260  Q
    |||||| | ||||||  ||||||||||| |||||||||||||||||||||||| |||||    
T  25209794 agggttcaagttttggcaaggagaaaaatactaacataataattaacatactaacattt 25209852  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 10301432 - 10301388
Alignment:
Q  220 aaggagaaaaaactaacataataattaacatactagcatttatca 264  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||    
T  10301432 aaggagaaaaatctaacataataattaacatactaacatttatca 10301388  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 35107978 - 35108031
Alignment:
Q  220 aaggagaaaaaactaacataataattaacatactagcatttatcactgaaaaaa 273  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||| | ||||||    
T  35107978 aaggagaaaaaactaatataataattaacatactaacatttgtcattaaaaaaa 35108031  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 53506214 - 53506263
Alignment:
Q  215 ttgaaaaggagaaaaaactaacataataattaacatactagcatttatca 264  Q
    ||||||| || ||||||||||||||| ||||||||||||| |||||||||    
T  53506214 ttgaaaatgaaaaaaaactaacataacaattaacatactaacatttatca 53506263  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 20494018 - 20494064
Alignment:
Q  227 aaaaactaacataataattaacatactagcatttatcactgaaaaaa 273  Q
    |||||||||||||||||||||||||||| ||||| ||| | ||||||    
T  20494018 aaaaactaacataataattaacatactaacatttgtcattaaaaaaa 20494064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 2579087 - 2579133
Alignment:
Q  227 aaaaactaacataataattaacatactagcatttatcactgaaaaaa 273  Q
    |||||||||||||| ||||| ||||||| ||||||||| ||||||||    
T  2579087 aaaaactaacataacaattagcatactaacatttatcattgaaaaaa 2579133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 43821181 - 43821132
Alignment:
Q  224 agaaaaaactaacataataattaacatactagcatttatcactgaaaaaa 273  Q
    |||||||| |||||||||||||||||||||| ||| ||||| | ||||||    
T  43821181 agaaaaaattaacataataattaacatactaacatatatcattcaaaaaa 43821132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 35394641 - 35394605
Alignment:
Q  228 aaaactaacataataattaacatactagcatttatca 264  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  35394641 aaaactaacatcataattaacctactagcatttatca 35394605  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 13636554 - 13636513
Alignment:
Q  223 gagaaaaaactaacataataattaacatactagcatttatca 264  Q
    ||||||||||||||||||||||||| | |||| |||||||||    
T  13636554 gagaaaaaactaacataataattaatacactaacatttatca 13636513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 13697741 - 13697700
Alignment:
Q  223 gagaaaaaactaacataataattaacatactagcatttatca 264  Q
    ||||||||||||||||||||||||| | |||| |||||||||    
T  13697741 gagaaaaaactaacataataattaatacactaacatttatca 13697700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 251
Target Start/End: Complemental strand, 6108882 - 6108854
Alignment:
Q  223 gagaaaaaactaacataataattaacata 251  Q
    |||||||||||||||||||||||||||||    
T  6108882 gagaaaaaactaacataataattaacata 6108854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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