View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4990_high_11 (Length: 283)
Name: NF4990_high_11
Description: NF4990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4990_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 4366081 - 4366343
Alignment:
| Q |
7 |
gaagcaaaggaacgatgttatctgaagaaatgaagttatggattgtgcatcaatgtgtgatagtgccttaatctcctaagtggttggcaaaacccgcaga |
106 |
Q |
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| T |
4366081 |
gaagcaaaggaacgatgttatctgaagaaatgaagttatgaattgtgcatcaatgtctgatagtgtcttaatctcctaagtggttggcaaaacccgcagg |
4366180 |
T |
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| Q |
107 |
aaagccgcaatagagcggttgtacggcagcaacgtagtgacaatatagtttggaggaaaccaaatgaaggatgcttcaagtgcaatgtagatgctaca-- |
204 |
Q |
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| T |
4366181 |
aaagccgcaatagagcagttgtacagcagcaaactagtgacaatatagtttggaggaaaccaaatgaaggatggttcaagtgcaatgtagatgttacagt |
4366280 |
T |
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| Q |
205 |
nnnnnnnattccagtaatcgtgttggtattggaatctgtattcgagatgattaagggagattt |
267 |
Q |
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| T |
4366281 |
tttttttattctagtaaacgtgttggcattggaatctatattcgagatgatcaagggagattt |
4366343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 6621840 - 6621710
Alignment:
| Q |
71 |
gccttaatctcctaagtggttggcaaaacccgcagaaaagccgcaatagagcggttgtacggcagcaacgtagtgacaatatagtttggaggaaaccaaa |
170 |
Q |
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| T |
6621840 |
gccttaatcttctaacgggttggcaaaacgcgcaagatagccgtaatcgagcggatgtacagcaacaacgtattgacgacacagtttggagaaagccaga |
6621741 |
T |
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| Q |
171 |
tgaaggatgcttcaagtgcaatgtagatgct |
201 |
Q |
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| T |
6621740 |
tgaaggtcatttcaaatgcaatgtagatgct |
6621710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 16144728 - 16144652
Alignment:
| Q |
73 |
cttaatctcctaagtggttggcaaaacccgcagaaaagccgcaatagagcggttgtacggcagcaacgtagtgacaa |
149 |
Q |
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| T |
16144728 |
cttaatctcctaacaggttggcaaaacgcgcaagatagccgtaatagagcgggtgtacagcaacaacgtattgacaa |
16144652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 17811843 - 17811956
Alignment:
| Q |
88 |
ggttggcaaaacccgcagaaaagccgcaatagagcggttgtacggcagcaacgtagtgacaatatagtttggaggaaaccaaatgaaggatgcttcaagt |
187 |
Q |
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| T |
17811843 |
ggttggcaaaacgcgcaagatagtcgtaatcgagcggatgtacagcaacagcgtattgacgacatagtttggaggaagccagatgaaggtcatttcaaat |
17811942 |
T |
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| Q |
188 |
gcaatgtagatgct |
201 |
Q |
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| T |
17811943 |
gcaatgtagatgct |
17811956 |
T |
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