View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4990_high_17 (Length: 212)
Name: NF4990_high_17
Description: NF4990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4990_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 21 - 195
Target Start/End: Original strand, 7745779 - 7745953
Alignment:
| Q |
21 |
tgatctggaacaacttgcatcttgttggagcaaagaagagaatcctaatttagaagaaaccaaatcaaactccaatagattgtcctccaattggtgtcca |
120 |
Q |
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| T |
7745779 |
tgatctggaacaacttgcatcttgttggagcaaggaagagaatcctaatttagaagaaaccaaatcaaactccaatagattgtcctccaattggtgtcca |
7745878 |
T |
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| Q |
121 |
ccaatcacaacagcagttcttggctcattaccaccatccacaaatccaagacatgctacatttttactcaccaag |
195 |
Q |
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| T |
7745879 |
ccaatcacaacagcagttcttggctcattaccaccatccacaaatccaagacatgctacatttttactcaccaag |
7745953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 7711816 - 7711640
Alignment:
| Q |
21 |
tgatctggaacaacttgcatcttgttggagcaaagaagag---aatcctaatttagaagaaaccaaatcaaactccaatagattgtcctccaattggtgt |
117 |
Q |
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|||||||||||||||| ||| ||| ||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7711816 |
tgatctggaacaacttccattttgaaggagcaaggaagagctgaatcctaatttagaagaaatcaaatcaaactccaatagattgtcctccaattggtgt |
7711717 |
T |
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| Q |
118 |
ccaccaatcacaacagcagttcttggctcattaccaccatccacaaatccaagacatgctacatttttactcaccaa |
194 |
Q |
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| T |
7711716 |
ccaccaatcacaacagctgttcttggctctttaccaccatccacaaatccaagacatgcaacatttttactcaccaa |
7711640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 7734121 - 7733949
Alignment:
| Q |
26 |
tggaacaacttgcatcttgttggagcaaagaagag---aatcctaatttagaagaaaccaaatcaaactccaatagattgtcctccaattggtgtccacc |
122 |
Q |
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| T |
7734121 |
tggaacaacttgcattttgaaggagcaaggaagagctgaatcctaatttagaagaaaccaaatcaaactccaatacaatgtcctccaactggtgtccacc |
7734022 |
T |
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| Q |
123 |
aatcacaacagcagttcttggctcattaccaccatccacaaatccaagacatgctacatttttactcaccaag |
195 |
Q |
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| T |
7734021 |
aataacaacagctgttcttggctctttaccaccatccacaaatccaagacatgctacatttttactcaccaag |
7733949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 60 - 194
Target Start/End: Complemental strand, 7726662 - 7726528
Alignment:
| Q |
60 |
gaatcctaatttagaagaaaccaaatcaaactccaatagattgtcctccaattggtgtccaccaatcacaacagcagttcttggctcattaccaccatcc |
159 |
Q |
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| T |
7726662 |
gaatcctaatttagaagaaaccaaatcaaactccaatacaatgtcctccaactggtgtccaccaataacaacagctgttcttggctctttaccaccatcc |
7726563 |
T |
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| Q |
160 |
acaaatccaagacatgctacatttttactcaccaa |
194 |
Q |
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| T |
7726562 |
acaaatccaagacatgcaacatttttattcaccaa |
7726528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 194
Target Start/End: Complemental strand, 7704452 - 7704318
Alignment:
| Q |
60 |
gaatcctaatttagaagaaaccaaatcaaactccaatagattgtcctccaattggtgtccaccaatcacaacagcagttcttggctcattaccaccatcc |
159 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||| | ||||||| || |||||||||||| |
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| T |
7704452 |
gaatcctaatttggaagaaactaaatcaaactccaatagattctcctccaattggtgcccaccaataacaattgatcttcttggttctttaccaccatcc |
7704353 |
T |
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| Q |
160 |
acaaatccaagacatgctacatttttactcaccaa |
194 |
Q |
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| T |
7704352 |
acaaatccaagacatgctacatttttattcaccaa |
7704318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 60 - 194
Target Start/End: Complemental strand, 7699751 - 7699617
Alignment:
| Q |
60 |
gaatcctaatttagaagaaaccaaatcaaactccaatagattgtcctccaattggtgtccaccaatcacaacagcagttcttggctcattaccaccatcc |
159 |
Q |
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||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||| ||||| | ||| |||||| |||||||||||| |
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| T |
7699751 |
gaatcctaatttagatgaaactaaatcaaactccagtagattgtcctccaattggtgcccaccaataacaactgatgttgttggctttttaccaccatcc |
7699652 |
T |
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| Q |
160 |
acaaatccaagacatgctacatttttactcaccaa |
194 |
Q |
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| T |
7699651 |
acaaatccaagacttgctacctttttattcaccaa |
7699617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 7766681 - 7766744
Alignment:
| Q |
67 |
aatttagaagaaaccaaatcaaactccaatagattgtcctccaattggtgtccaccaatcacaa |
130 |
Q |
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||||| |||||| ||||||||||| |||| |||||||| |||||||| ||||||||||| |||| |
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| T |
7766681 |
aatttggaagaagccaaatcaaacaccaaaagattgtcttccaattgatgtccaccaataacaa |
7766744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 7774008 - 7774071
Alignment:
| Q |
67 |
aatttagaagaaaccaaatcaaactccaatagattgtcctccaattggtgtccaccaatcacaa |
130 |
Q |
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||||| |||||| | ||||||||| |||| ||||||||||||||||| ||||||||||| |||| |
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| T |
7774008 |
aatttggaagaagctaaatcaaacaccaaaagattgtcctccaattgatgtccaccaataacaa |
7774071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 7766766 - 7766814
Alignment:
| Q |
137 |
ttcttggctcattaccaccatccacaaatccaagacatgctacattttt |
185 |
Q |
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|||||||||| | || ||||| |||||||||||||||||||||||||| |
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| T |
7766766 |
ttcttggctctgtccctccatcaacaaatccaagacatgctacattttt |
7766814 |
T |
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