View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4990_high_3 (Length: 471)

Name: NF4990_high_3
Description: NF4990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4990_high_3
NF4990_high_3
[»] chr7 (12 HSPs)
chr7 (19-460)||(14749610-14750051)
chr7 (19-191)||(14709173-14709345)
chr7 (229-406)||(14757739-14757916)
chr7 (20-223)||(14764660-14764863)
chr7 (244-393)||(14764914-14765063)
chr7 (240-406)||(14661502-14661668)
chr7 (19-191)||(14756814-14756973)
chr7 (89-223)||(14661715-14661849)
chr7 (240-406)||(14653067-14653233)
chr7 (150-217)||(14757627-14757694)
chr7 (369-405)||(14812990-14813026)
chr7 (369-405)||(15259985-15260021)
[»] chr5 (9 HSPs)
chr5 (19-191)||(17571576-17571748)
chr5 (140-407)||(17621700-17621966)
chr5 (229-406)||(17570619-17570796)
chr5 (20-223)||(17563736-17563939)
chr5 (244-393)||(17563536-17563685)
chr5 (89-223)||(17683412-17683546)
chr5 (240-406)||(17683593-17683759)
chr5 (150-217)||(17570841-17570908)
chr5 (369-405)||(17521154-17521190)
[»] chr8 (2 HSPs)
chr8 (32-223)||(24395092-24395283)
chr8 (240-396)||(24395330-24395486)
[»] chr1 (8 HSPs)
chr1 (20-221)||(15195106-15195307)
chr1 (20-221)||(15215524-15215725)
chr1 (244-406)||(15196011-15196173)
chr1 (244-406)||(15216429-15216591)
chr1 (244-406)||(15195360-15195522)
chr1 (244-406)||(15215778-15215940)
chr1 (146-221)||(15195883-15195958)
chr1 (146-221)||(15216301-15216376)


Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Original strand, 14749610 - 14750051
Alignment:
Q  19 gctaactccatttagaccctttctaagcttatcgtctacaaatagtgaaatgtactctggagaacaagggttcaagttaatgaaaaattcaaaccaggaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14749610 gctaactccatttagaccctttctaagcttatcgtctacaaatagtgaaatgtactctggagaacaagggttcaagttaatgaaaaattcaaaccaggaa 14749709  T
Q  119 ttcaaaacattttggaacatattgttgttactaaattccaagtttataatcttgtcgtatttatctttctcatccaagagcctctgcacaaattcaacag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14749710 ttcaaaacattttggaacatattgttgttactaaattccaagtttataatcttgtcgtatttatctttctcatccaagagcctctgcacaaattcaacag 14749809  T
Q  219 gatccagaatggactctctgttgtgtgaagtcatcacttcacgtattttcaagagaccatcaggaacacgatggaacaaggtatacattctacccaaatc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14749810 gatccagaatggactctctgttgtgtgaagtcatcacttcacgtattttcaagagaccatcaggaacacgatggaacaagttatacattctacccaaatc 14749909  T
Q  319 gttatatttatcaccacaaagcatgtttactaacccagaattctgcaattggattaatctaagcatgtgattttcaatagtctccttcagcatattagta 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14749910 gttatatttatcaccacaaagcatgtttactaacccagaattctgcaattggattaatctaagcatgtgattttcaatagtctccttcagcatattagta 14750009  T
Q  419 atcttctcttttttcccattgtcccataaatggttcagtcta 460  Q
    |||||||||||| ||||| | ||| |||||||| ||||||||    
T  14750010 atcttctcttttgtcccagtatccaataaatggctcagtcta 14750051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 14709345 - 14709173
Alignment:
Q  19 gctaactccatttagaccctttctaagcttatcgtctacaaatagtgaaatgtactctggagaacaagggttcaagttaatgaaaaattcaaaccaggaa 118  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||    
T  14709345 gctaactccctttagttcctttctaagcttatcgtctacaaatagtgaaatgtactctggagaacaagggtttaagttaatgaaaaattcgaacgaggaa 14709246  T
Q  119 ttcaaaacattttggaacatattgttgttactaaattccaagtttataatcttgtcgtatttatctttctcat 191  Q
    |||||| |||||||||||| |||||| || |||||||||||||||||||| || ||||||| || ||||||||    
T  14709245 ttcaaagcattttggaacaaattgttatttctaaattccaagtttataattttctcgtattcatatttctcat 14709173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 229 - 406
Target Start/End: Original strand, 14757739 - 14757916
Alignment:
Q  229 ggactctctgttgtgtgaagtcatcacttcacgtattttcaagagaccatcaggaacacgatggaacaaggtatacattctacccaaatcgttatattta 328  Q
    |||||||||| ||||||||||| ||||||||||||||||| ||||||||| || ||||||| | |||||| |||||||||| |||||||| | |||||||    
T  14757739 ggactctctgatgtgtgaagtcgtcacttcacgtattttcgagagaccattagtaacacgacgaaacaagttatacattcttcccaaatcttcatattta 14757838  T
Q  329 tcaccacaaagcatgtttactaacccagaattctgcaattggattaatctaagcatgtgattttcaatagtctccttc 406  Q
    |||||||||||||||||||||||||| || |||| ||  |||||||||||||||||||||||||||||  ||||||||    
T  14757839 tcaccacaaagcatgtttactaaccccgagttctccatatggattaatctaagcatgtgattttcaatcatctccttc 14757916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 14764660 - 14764863
Alignment:
Q  20 ctaactccatttagaccctttctaagcttatcgtctacaaatagtgaaatgtactctggagaacaagggttcaagttaatgaaaaattcaaaccaggaat 119  Q
    |||||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||  || ||| |||||||| ||||||||||||||  ||||||    
T  14764660 ctaactccctttagaccttttcgaagcttatcgtctacaaagagtgaaatgtactctggaatacgaggattcaagttcatgaaaaattcaaatgaggaat 14764759  T
Q  120 tcaaaacattttggaacatattgttgttactaaattccaagtttataatcttgtcgtatttatctttctcatccaagagcctctgcacaaattcaacagg 219  Q
    ||| | | ||   |||||  ||||  ||||||||| |||| | ||||||||||| | ||||||||||| ||||  |||||||||||||||||||||||||    
T  14764760 tcagatctttcatgaacaacttgtcattactaaatgccaaatctataatcttgttgaatttatctttcacatctgagagcctctgcacaaattcaacagg 14764859  T
Q  220 atcc 223  Q
    ||||    
T  14764860 atcc 14764863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 244 - 393
Target Start/End: Original strand, 14764914 - 14765063
Alignment:
Q  244 tgaagtcatcacttcacgtattttcaagagaccatcaggaacacgatggaacaaggtatacattctacccaaatcgttatatttatcaccacaaagcatg 343  Q
    |||||||||||||||||||||||||||||||||||| |  ||||||  ||||||| ||||||| ||||||||||| | |||||||||| ||| |||||||    
T  14764914 tgaagtcatcacttcacgtattttcaagagaccatcggtgacacgactgaacaagttatacatcctacccaaatcttcatatttatcatcaccaagcatg 14765013  T
Q  344 tttactaacccagaattctgcaattggattaatctaagcatgtgattttc 393  Q
    ||||||||||||||| ||| |   | ||||||||||||||||||||||||    
T  14765014 tttactaacccagaagtctccttatagattaatctaagcatgtgattttc 14765063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 240 - 406
Target Start/End: Complemental strand, 14661668 - 14661502
Alignment:
Q  240 tgtgtgaagtcatcacttcacgtattttcaagagaccatcaggaacacgatggaacaaggtatacattctacccaaatcgttatatttatcaccacaaag 339  Q
    |||||||  ||||| ||||  ||||||| ||||||||||||||||||||| |||||||| ||||||||||  ||||||| | |||||||| |||||||||    
T  14661668 tgtgtgagatcatcgcttcttgtatttttaagagaccatcaggaacacgacggaacaagttatacattctttccaaatcttcatatttattaccacaaag 14661569  T
Q  340 catgtttactaacccagaattctgcaattggattaatctaagcatgtgattttcaatagtctccttc 406  Q
    ||||||||| |||||||| |||| ||  | ||||||||| |||||| ||||||||||  ||||||||    
T  14661568 catgtttacaaacccagagttctccatattgattaatctcagcatgggattttcaatcatctccttc 14661502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 14756814 - 14756973
Alignment:
Q  19 gctaactccatttagaccctttctaagcttatcgtctacaaatagtgaaatgtactctggagaacaagggttcaagttaatgaaaaattcaaaccaggaa 118  Q
    ||||||||| |||||   |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||        
T  14756814 gctaactccctttagttactttctaagcttatcgtctacaaatagtgaaatgtactctggagtacaagggttcaagttaatgaaaaattcaaagca---- 14756909  T
Q  119 ttcaaaacattttggaacatattgttgttactaaattccaagtttataatcttgtcgtatttatctttctcat 191  Q
             |||||||||| |||||| || ||||||| |||||||||||| || ||||||| || ||||||||    
T  14756910 ---------ttttggaacaaattgttatttctaaatttcaagtttataattttctcgtattcatatttctcat 14756973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 89 - 223
Target Start/End: Complemental strand, 14661849 - 14661715
Alignment:
Q  89 ttcaagttaatgaaaaattcaaaccaggaattcaaaacattttggaacatattgttgttactaaattccaagtttataatcttgtcgtatttatctttct 188  Q
    ||||||||| |||||||||||||  ||||||| ||| ||||  | || |  ||||  ||||||||| ||| ||||||||||||||||||||||||||| |    
T  14661849 ttcaagttagtgaaaaattcaaataaggaattaaaagcattccgtaaaaacttgtcattactaaatgccatgtttataatcttgtcgtatttatctttgt 14661750  T
Q  189 catccaagagcctctgcacaaattcaacaggatcc 223  Q
    |||||||||||||||||| ||||||||||||||||    
T  14661749 catccaagagcctctgcaaaaattcaacaggatcc 14661715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 240 - 406
Target Start/End: Complemental strand, 14653233 - 14653067
Alignment:
Q  240 tgtgtgaagtcatcacttcacgtattttcaagagaccatcaggaacacgatggaacaaggtatacattctacccaaatcgttatatttatcaccacaaag 339  Q
    |||||||  ||||||||||   ||||||  ||||||||| |||||||||  |||||||| ||||||||||  ||||||| | |||||||  |||||||||    
T  14653233 tgtgtgagatcatcacttcttttatttttgagagaccattaggaacacgtcggaacaagttatacattctttccaaatcttcatatttagtaccacaaag 14653134  T
Q  340 catgtttactaacccagaattctgcaattggattaatctaagcatgtgattttcaatagtctccttc 406  Q
    ||||||||| |||||||| |||| ||  | ||||||||| |||||| ||||||||||  ||||||||    
T  14653133 catgtttacaaacccagagttctccatattgattaatctcagcatgggattttcaatcatctccttc 14653067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 14757627 - 14757694
Alignment:
Q  150 taaattccaagtttataatcttgtcgtatttatctttctcatccaagagcctctgcacaaattcaaca 217  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||| || | |||||||||||||||||||    
T  14757627 taaatcccaagcttataatcttgtcatatttatctttctcatctaacaacctctgcacaaattcaaca 14757694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 14812990 - 14813026
Alignment:
Q  369 ggattaatctaagcatgtgattttcaatagtctcctt 405  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  14812990 ggattaatctaagcatgtggttttcaataatctcctt 14813026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 15259985 - 15260021
Alignment:
Q  369 ggattaatctaagcatgtgattttcaatagtctcctt 405  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  15259985 ggattaatctaagcatgtggttttcaataatctcctt 15260021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 17571748 - 17571576
Alignment:
Q  19 gctaactccatttagaccctttctaagcttatcgtctacaaatagtgaaatgtactctggagaacaagggttcaagttaatgaaaaattcaaaccaggaa 118  Q
    ||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  17571748 gctaactccctttagttcctttctaagcttatcgtctacaaatagtgaaatgtactctggagaacaagggttcaagttaatgaaaaattcgaacgaggaa 17571649  T
Q  119 ttcaaaacattttggaacatattgttgttactaaattccaagtttataatcttgtcgtatttatctttctcat 191  Q
    |||||| |||||||||| | |||||| || |||||||||||||||||||| || ||||||| || ||||||||    
T  17571648 ttcaaagcattttggaagaaattgttatttctaaattccaagtttataattttctcgtattcatatttctcat 17571576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 140 - 407
Target Start/End: Original strand, 17621700 - 17621966
Alignment:
Q  140 ttgttgttactaaattccaagtttataatcttgtcgtatttatctttctcatccaagagcctctgcacaaattcaacaggatccagaatggactctctgt 239  Q
    |||| ||| |||||| ||| |||||||||||| |||||||||||||||||||| |||||| |||||||| ||||||||||||||   |     |||        
T  17621700 ttgtcgttgctaaatgccatgtttataatcttctcgtatttatctttctcatctaagagcttctgcacatattcaacaggatccttcaacctttctggaa 17621799  T
Q  240 tgtgtgaagtcatcacttcacgtattttcaagagaccatcaggaacacgatggaacaaggtatacattctacccaaatcgttatatttatcaccacaaag 339  Q
    |||||||||||||||| |||| |||||| | |||| |||||||||||||| |||||||| |||||||||||||||| || | |||||||||||||||||     
T  17621800 tgtgtgaagtcatcacgtcacatattttta-gagaacatcaggaacacgacggaacaagttatacattctacccaagtcttcatatttatcaccacaaat 17621898  T
Q  340 catgtttactaacccagaattctgcaattggattaatctaagcatgtgattttcaatagtctccttca 407  Q
    ||||||||||||||||||||| | ||  ||||||||||||||||||| |||||||||| |||||||||    
T  17621899 catgtttactaacccagaattttccatatggattaatctaagcatgtcattttcaataatctccttca 17621966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 229 - 406
Target Start/End: Complemental strand, 17570796 - 17570619
Alignment:
Q  229 ggactctctgttgtgtgaagtcatcacttcacgtattttcaagagaccatcaggaacacgatggaacaaggtatacattctacccaaatcgttatattta 328  Q
    |||||||||| ||||||||||| ||||||||||||||||| ||||||||| || ||||||| | |||||| |||||||||| |||||||| | |||||||    
T  17570796 ggactctctgatgtgtgaagtcgtcacttcacgtattttcgagagaccattagtaacacgacgaaacaagttatacattcttcccaaatcttcatattta 17570697  T
Q  329 tcaccacaaagcatgtttactaacccagaattctgcaattggattaatctaagcatgtgattttcaatagtctccttc 406  Q
    |||||||||||||||||||||||||| || |||| ||  |||||||||||||||||||||||||||||  ||||||||    
T  17570696 tcaccacaaagcatgtttactaaccccgagttctccatatggattaatctaagcatgtgattttcaatcatctccttc 17570619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 17563939 - 17563736
Alignment:
Q  20 ctaactccatttagaccctttctaagcttatcgtctacaaatagtgaaatgtactctggagaacaagggttcaagttaatgaaaaattcaaaccaggaat 119  Q
    |||||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||||  || ||| |||||||| ||||||||||||||  ||||||    
T  17563939 ctaactccctttagaccttttcgaagcttatcgtctacaaagagtgaaatgtactctggaatacgaggattcaagttcatgaaaaattcaaatgaggaat 17563840  T
Q  120 tcaaaacattttggaacatattgttgttactaaattccaagtttataatcttgtcgtatttatctttctcatccaagagcctctgcacaaattcaacagg 219  Q
    ||| | | ||   |||||  ||||  ||||||||| |||| | ||||||||||| | ||||||||||| ||||  |||||||||||||||||||||||||    
T  17563839 tcagatctttcatgaacaacttgtcattactaaatgccaaatctataatcttgttgaatttatctttcacatctgagagcctctgcacaaattcaacagg 17563740  T
Q  220 atcc 223  Q
    ||||    
T  17563739 atcc 17563736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 244 - 393
Target Start/End: Complemental strand, 17563685 - 17563536
Alignment:
Q  244 tgaagtcatcacttcacgtattttcaagagaccatcaggaacacgatggaacaaggtatacattctacccaaatcgttatatttatcaccacaaagcatg 343  Q
    |||||||||||||||||||||||||||||||||||| |  ||||||  ||||||| ||||||| ||||||||||| | |||||||||| ||| |||||||    
T  17563685 tgaagtcatcacttcacgtattttcaagagaccatcggtgacacgactgaacaagttatacatcctacccaaatcttcatatttatcatcaccaagcatg 17563586  T
Q  344 tttactaacccagaattctgcaattggattaatctaagcatgtgattttc 393  Q
    ||||||||||||||| ||| |   | ||||||||||||||||||||||||    
T  17563585 tttactaacccagaagtctccttatagattaatctaagcatgtgattttc 17563536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 89 - 223
Target Start/End: Original strand, 17683412 - 17683546
Alignment:
Q  89 ttcaagttaatgaaaaattcaaaccaggaattcaaaacattttggaacatattgttgttactaaattccaagtttataatcttgtcgtatttatctttct 188  Q
    ||||||||| |||||||||||||  ||||||| ||| ||||  |||| |  ||||  ||||||||| ||| ||||||||||||||||||||||||||| |    
T  17683412 ttcaagttagtgaaaaattcaaataaggaattaaaagcattccggaaaaacttgtcattactaaatgccatgtttataatcttgtcgtatttatctttgt 17683511  T
Q  189 catccaagagcctctgcacaaattcaacaggatcc 223  Q
    ||||||| |||||||||| ||||||||||||||||    
T  17683512 catccaatagcctctgcaaaaattcaacaggatcc 17683546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 240 - 406
Target Start/End: Original strand, 17683593 - 17683759
Alignment:
Q  240 tgtgtgaagtcatcacttcacgtattttcaagagaccatcaggaacacgatggaacaaggtatacattctacccaaatcgttatatttatcaccacaaag 339  Q
    |||||||  ||||| ||||  |||||||  |||||||||||||||| ||| |||||||| ||||||||||  ||||||| | |||||||| |||||||||    
T  17683593 tgtgtgagatcatcgcttcttgtatttttgagagaccatcaggaacccgacggaacaagttatacattctttccaaatcttcatatttattaccacaaag 17683692  T
Q  340 catgtttactaacccagaattctgcaattggattaatctaagcatgtgattttcaatagtctccttc 406  Q
    ||||||||| |||||||| |||| ||  | ||||||||| |||||| ||||||||||  ||||||||    
T  17683693 catgtttacaaacccagagttctccatattgattaatctcagcatgggattttcaatcatctccttc 17683759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 17570908 - 17570841
Alignment:
Q  150 taaattccaagtttataatcttgtcgtatttatctttctcatccaagagcctctgcacaaattcaaca 217  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||| || | |||||||||||||||||||    
T  17570908 taaatcccaagcttataatcttgtcatatttatctttctcatctaacaacctctgcacaaattcaaca 17570841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 405
Target Start/End: Complemental strand, 17521190 - 17521154
Alignment:
Q  369 ggattaatctaagcatgtgattttcaatagtctcctt 405  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  17521190 ggattaatctaagcatgtggttttcaataatctcctt 17521154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 32 - 223
Target Start/End: Original strand, 24395092 - 24395283
Alignment:
Q  32 agaccctttctaagcttatcgtctacaaatagtgaaatgtactctggagaacaagggttcaagttaatgaaaaattcaaaccaggaattcaaaacatttt 131  Q
    |||||||| | ||| ||||| |||||||||||||||||| ||||||||||||  || ||||||||||||||| |||||||| ||||||||||| |||| |    
T  24395092 agacccttacgaagtttatcatctacaaatagtgaaatgaactctggagaacggggattcaagttaatgaaatattcaaacgaggaattcaaagcattct 24395191  T
Q  132 ggaacatattgttgttactaaattccaagtttataatcttgtcgtatttatctttctcatccaagagcctctgcacaaattcaacaggatcc 223  Q
    ||||    |||| |||  | ||| ||  ||||||||||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||    
T  24395192 ggaaagacttgtcgttgttgaatgcctggtttataatcttgtcgtatttgtctttctcatctaagagcctctgcacaaactcgactggatcc 24395283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 240 - 396
Target Start/End: Original strand, 24395330 - 24395486
Alignment:
Q  240 tgtgtgaagtcatcacttcacgtattttcaagagaccatcaggaacacgatggaacaaggtatacattctacccaaatcgttatatttatcaccacaaag 339  Q
    ||||| |||||||||| || ||||||||||| ||||| || |  |||||  |||||||| ||||||| ||||||||||| | |||||||||| |||||||    
T  24395330 tgtgtaaagtcatcacctctcgtattttcaaaagaccgtcggctacacggcggaacaagttatacatcctacccaaatcttcatatttatcatcacaaag 24395429  T
Q  340 catgtttactaacccagaattctgcaattggattaatctaagcatgtgattttcaat 396  Q
    |||||| ||||| |||||||||| ||  |||||||| || |||||||||||||||||    
T  24395430 catgttgactaaaccagaattctccatatggattaacctgagcatgtgattttcaat 24395486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 15195106 - 15195307
Alignment:
Q  20 ctaactccatttagaccctttctaagcttatcgtctacaaatagtgaaatgtactctggagaacaagggttcaagttaatgaaaaattcaaaccaggaat 119  Q
    |||| ||| |||||||| |||  ||||||||||| || |||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||  ||||||    
T  15195106 ctaattccctttagaccattttgaagcttatcgtttaaaaatagtgaaatgtactctggagaacgaggattcaagttaatgataaattcgaaggaggaat 15195205  T
Q  120 tcaaaacattttggaacatattgttgttactaaattccaagtttataatcttgtcgtatttatctttctcatccaagagcctctgcacaaattcaacagg 219  Q
     || | | || |||||||  ||||  ||||||||| |||| ||||||||| ||  | |||||||||||||||| || |||||||||||||||||||| ||    
T  15195206 acagatctttctggaacaacttgtcattactaaatgccaaatttataatcctgctgaatttatctttctcatctaaaagcctctgcacaaattcaaccgg 15195305  T
Q  220 at 221  Q
    ||    
T  15195306 at 15195307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 15215524 - 15215725
Alignment:
Q  20 ctaactccatttagaccctttctaagcttatcgtctacaaatagtgaaatgtactctggagaacaagggttcaagttaatgaaaaattcaaaccaggaat 119  Q
    |||| ||| |||||||| |||  ||||||||||| || |||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||  ||||||    
T  15215524 ctaattccctttagaccattttgaagcttatcgtttaaaaatagtgaaatgtactctggagaacgaggattcaagttaatgataaattcgaaggaggaat 15215623  T
Q  120 tcaaaacattttggaacatattgttgttactaaattccaagtttataatcttgtcgtatttatctttctcatccaagagcctctgcacaaattcaacagg 219  Q
     || | | || |||||||  ||||  ||||||||| |||| ||||||||| ||  | |||||||||||||||| || |||||||||||||||||||| ||    
T  15215624 acagatctttctggaacaacttgtcattactaaatgccaaatttataatcctgctgaatttatctttctcatctaaaagcctctgcacaaattcaaccgg 15215723  T
Q  220 at 221  Q
    ||    
T  15215724 at 15215725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 244 - 406
Target Start/End: Original strand, 15196011 - 15196173
Alignment:
Q  244 tgaagtcatcacttcacgtattttcaagagaccatcaggaacacgatggaacaaggtatacattctacccaaatcgttatatttatcaccacaaagcatg 343  Q
    ||||||||||||||| ||||||| | |||||||| | |  |||||| |||||||| |||||||||||  |||||| ||||| |||||| ||| || ||||    
T  15196011 tgaagtcatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctaatcaaatctttatacttatcatcaccaatcatg 15196110  T
Q  344 tttactaacccagaattctgcaattggattaatctaagcatgtgattttcaatagtctccttc 406  Q
    |||||||||||||| |||| ||  |||||||||||||||||||||||||| ||  ||||||||    
T  15196111 tttactaacccagagttctccatatggattaatctaagcatgtgattttcgatcatctccttc 15196173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 244 - 406
Target Start/End: Original strand, 15216429 - 15216591
Alignment:
Q  244 tgaagtcatcacttcacgtattttcaagagaccatcaggaacacgatggaacaaggtatacattctacccaaatcgttatatttatcaccacaaagcatg 343  Q
    ||||||||||||||| ||||||| | |||||||| | |  |||||| |||||||| |||||||||||  |||||| ||||| |||||| ||| || ||||    
T  15216429 tgaagtcatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctaatcaaatctttatacttatcatcaccaatcatg 15216528  T
Q  344 tttactaacccagaattctgcaattggattaatctaagcatgtgattttcaatagtctccttc 406  Q
    |||||||||||||| |||| ||  |||||||||||||||||||||||||| ||  ||||||||    
T  15216529 tttactaacccagagttctccatatggattaatctaagcatgtgattttcgatcatctccttc 15216591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 244 - 406
Target Start/End: Original strand, 15195360 - 15195522
Alignment:
Q  244 tgaagtcatcacttcacgtattttcaagagaccatcaggaacacgatggaacaaggtatacattctacccaaatcgttatatttatcaccacaaagcatg 343  Q
    |||||| |||||||| ||||||| | |||||||| | |  |||||| |||||||| |||||||||||| |||||| | ||| |||||| ||| || ||||    
T  15195360 tgaagtaatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctactcaaatcttcatacttatcatcaccaatcatg 15195459  T
Q  344 tttactaacccagaattctgcaattggattaatctaagcatgtgattttcaatagtctccttc 406  Q
    |||||||||||||| |||| ||   |||||||||||| |||||||||||| ||  ||||||||    
T  15195460 tttactaacccagagttctccataaggattaatctaatcatgtgattttcgatcatctccttc 15195522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 244 - 406
Target Start/End: Original strand, 15215778 - 15215940
Alignment:
Q  244 tgaagtcatcacttcacgtattttcaagagaccatcaggaacacgatggaacaaggtatacattctacccaaatcgttatatttatcaccacaaagcatg 343  Q
    |||||| |||||||| ||||||| | |||||||| | |  |||||| |||||||| |||||||||||| |||||| | ||| |||||| ||| || ||||    
T  15215778 tgaagtaatcacttctcgtatttgcgagagaccaccggtgacacgacggaacaagttatacattctactcaaatcttcatacttatcatcaccaatcatg 15215877  T
Q  344 tttactaacccagaattctgcaattggattaatctaagcatgtgattttcaatagtctccttc 406  Q
    |||||||||||||| |||| ||   |||||||||||| |||||||||||| ||  ||||||||    
T  15215878 tttactaacccagagttctccataaggattaatctaatcatgtgattttcgatcatctccttc 15215940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 15195883 - 15195958
Alignment:
Q  146 ttactaaattccaagtttataatcttgtcgtatttatctttctcatccaagagcctctgcacaaattcaacaggat 221  Q
    ||||||||| |||| ||||||||| ||  | |||||||||||||||| ||||||||||||||||||||||| ||||    
T  15195883 ttactaaatgccaaatttataatcctgctgaatttatctttctcatctaagagcctctgcacaaattcaaccggat 15195958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 15216301 - 15216376
Alignment:
Q  146 ttactaaattccaagtttataatcttgtcgtatttatctttctcatccaagagcctctgcacaaattcaacaggat 221  Q
    ||||||||| |||| ||||||||| ||  | |||||||||||||||| ||||||||||||||||||||||| ||||    
T  15216301 ttactaaatgccaaatttataatcctgctgaatttatctttctcatctaagagcctctgcacaaattcaaccggat 15216376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University