View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4990_high_9 (Length: 296)

Name: NF4990_high_9
Description: NF4990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4990_high_9
NF4990_high_9
[»] chr4 (2 HSPs)
chr4 (13-278)||(50096406-50096671)
chr4 (20-59)||(25209812-25209852)
[»] chr5 (1 HSPs)
chr5 (20-63)||(10301388-10301431)
[»] chr6 (1 HSPs)
chr6 (20-72)||(35107979-35108031)
[»] chr3 (2 HSPs)
chr3 (26-72)||(20494018-20494064)
chr3 (25-63)||(53506225-53506263)
[»] chr2 (3 HSPs)
chr2 (26-72)||(2579087-2579133)
chr2 (23-72)||(43821132-43821181)
chr2 (27-63)||(35394605-35394641)
[»] chr7 (2 HSPs)
chr7 (22-63)||(13636513-13636554)
chr7 (22-63)||(13697700-13697741)
[»] chr1 (1 HSPs)
chr1 (22-50)||(6108854-6108882)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 50096406 - 50096671
Alignment:
Q  13 tgagattaggagaaaaaactaacataataattaacatactagcatttatcactgaaaaaagaatgaattggtttgactgccttgacatcacatgattttg 112  Q
    ||||| || |||||||||||||||||| |||||||||| ||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  50096406 tgagactaagagaaaaaactaacataacaattaacatattag-atttatcactgaaaaaaaattgaattggtttgactgccttgacatcacatgattttg 50096504  T
Q  113 caatcctatgcttgtatgtagtatcttggcggcaatttggacctcccgtgcttt-gaagagtgataaatcaaaattgctacacacatcataacaaagaaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50096505 caatcctatgcttgtatgtagtatcttggcggcaatttggacctcccgtgcttttgaagagtgataaatcaaaattgctacacacatcataacaaagaaa 50096604  T
Q  212 aggaaataacttacaccatgtttactccatgaaaacgtttttattttattttgtcaagtagtttaat 278  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  50096605 aggaaataacttacactatgtttactccatgaaaacgtttttattttattttgtcaagtaatttaat 50096671  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 25209812 - 25209852
Alignment:
Q  20 aggagaaaaa-actaacataataattaacatactagcattt 59  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  25209812 aggagaaaaatactaacataataattaacatactaacattt 25209852  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 10301431 - 10301388
Alignment:
Q  20 aggagaaaaaactaacataataattaacatactagcatttatca 63  Q
    |||||||||| ||||||||||||||||||||||| |||||||||    
T  10301431 aggagaaaaatctaacataataattaacatactaacatttatca 10301388  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 35107979 - 35108031
Alignment:
Q  20 aggagaaaaaactaacataataattaacatactagcatttatcactgaaaaaa 72  Q
    ||||||||||||||| |||||||||||||||||| ||||| ||| | ||||||    
T  35107979 aggagaaaaaactaatataataattaacatactaacatttgtcattaaaaaaa 35108031  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 20494018 - 20494064
Alignment:
Q  26 aaaaactaacataataattaacatactagcatttatcactgaaaaaa 72  Q
    |||||||||||||||||||||||||||| ||||| ||| | ||||||    
T  20494018 aaaaactaacataataattaacatactaacatttgtcattaaaaaaa 20494064  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 53506225 - 53506263
Alignment:
Q  25 aaaaaactaacataataattaacatactagcatttatca 63  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  53506225 aaaaaactaacataacaattaacatactaacatttatca 53506263  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 2579087 - 2579133
Alignment:
Q  26 aaaaactaacataataattaacatactagcatttatcactgaaaaaa 72  Q
    |||||||||||||| ||||| ||||||| ||||||||| ||||||||    
T  2579087 aaaaactaacataacaattagcatactaacatttatcattgaaaaaa 2579133  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 43821181 - 43821132
Alignment:
Q  23 agaaaaaactaacataataattaacatactagcatttatcactgaaaaaa 72  Q
    |||||||| |||||||||||||||||||||| ||| ||||| | ||||||    
T  43821181 agaaaaaattaacataataattaacatactaacatatatcattcaaaaaa 43821132  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 35394641 - 35394605
Alignment:
Q  27 aaaactaacataataattaacatactagcatttatca 63  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  35394641 aaaactaacatcataattaacctactagcatttatca 35394605  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 13636554 - 13636513
Alignment:
Q  22 gagaaaaaactaacataataattaacatactagcatttatca 63  Q
    ||||||||||||||||||||||||| | |||| |||||||||    
T  13636554 gagaaaaaactaacataataattaatacactaacatttatca 13636513  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 13697741 - 13697700
Alignment:
Q  22 gagaaaaaactaacataataattaacatactagcatttatca 63  Q
    ||||||||||||||||||||||||| | |||| |||||||||    
T  13697741 gagaaaaaactaacataataattaatacactaacatttatca 13697700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 6108882 - 6108854
Alignment:
Q  22 gagaaaaaactaacataataattaacata 50  Q
    |||||||||||||||||||||||||||||    
T  6108882 gagaaaaaactaacataataattaacata 6108854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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