View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4990_low_11 (Length: 291)
Name: NF4990_low_11
Description: NF4990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4990_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 280
Target Start/End: Original strand, 49727060 - 49727325
Alignment:
| Q |
15 |
cttccaacgtattcaaaggttaaccgtcttgaacctgctgatctttttaaggtgttaagcggtgaaatttccatcaaattacaagtttctcagaattgtt |
114 |
Q |
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| T |
49727060 |
cttccaacgtattcaaaggttgaccgtcttgaacctgctgatctttttaaggtgttaagcggtgaaatttccatcaaattacaagtttctcagaattgtt |
49727159 |
T |
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| Q |
115 |
ctagctgccatgatctttatggtggtcaatgtctacttgataacaatggccagttttattgtaaacaaggtaaggtaccatctcaaattactcaaattat |
214 |
Q |
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| T |
49727160 |
ctagctgccatgatctttatggtggtcaatgtctacttgataacaatggccagttttattgtaaacaaggtaaggtaccatctcaaattactcaaattat |
49727259 |
T |
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| Q |
215 |
tatactctattcttgccacaaattcaatccagattaatgttgttgggaatttttgtttcgtttcat |
280 |
Q |
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| T |
49727260 |
tatactctattcttgccacaaattcaatccagattaatgttgttgggaatttttgtttcgtttcat |
49727325 |
T |
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