View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4990_low_14 (Length: 273)
Name: NF4990_low_14
Description: NF4990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4990_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 43620666 - 43620910
Alignment:
| Q |
11 |
catcatcaacaaggctatgattgtggtcattgttaaaatcccatacataccaacatcgactaccagaaccaatgtgcacaatacatttggcatcacatcc |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
43620666 |
catcatcgacaaggctatgattgtggtcattgttaaaatcccatacataccaacatcgactaccagaatcaatgtgcacactacatttggcatcacatcc |
43620765 |
T |
|
| Q |
111 |
gcacctagtgtcagctcttgcctcacgcttacggattttattgttctcaagcnnnnnnnctctgaaaccttgtctatatagcaaacaaatatttgttata |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||| || |
|
|
| T |
43620766 |
gcacctagtgtcagctcttgcctcacgcttacggattttattgttctcaagctttttttctctgaaaccttgtc--tgtagcaaacaaatatttgttgta |
43620863 |
T |
|
| Q |
211 |
taatctcgttgtttttgtttcttcttactttgcttctacgagcagaa |
257 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
43620864 |
taatctcgttgtttttgtttctccttacttttcttctacgagcagaa |
43620910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 103 - 257
Target Start/End: Complemental strand, 16360845 - 16360693
Alignment:
| Q |
103 |
tcacatccgcacctagtgtcagctcttgcctcacgcttacggattttattgttctcaagcnnnnnnnctctgaaaccttgtctatatagcaaacaaatat |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| || |||||||||||| |
|
|
| T |
16360845 |
tcacatccgcacctagtgtcagctcttgcctcacgcttacggattttattgttctcaagctttttttctctaaaaccttgtctgta--gcaaacaaatat |
16360748 |
T |
|
| Q |
203 |
ttgttatataatctcgttgtttttgtttcttcttactttgcttctacgagcagaa |
257 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16360747 |
ttgttgtataatctcgttgtttttgtttctccttactttgcttctacgagcagaa |
16360693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University