View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4990_low_16 (Length: 242)
Name: NF4990_low_16
Description: NF4990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4990_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 47473612 - 47473401
Alignment:
| Q |
16 |
tcactgctgtacaaatagagtggtctctttggactcgcgacattgaggaggagatagttcctctctgcaggttagtttgagttcctctccaagttcattg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473612 |
tcactgctgtacaaatagagtggtctctttggactcgcgacattgaggaggagatagttcctctctgcaggttagtttgagttcctctccaagttcattg |
47473513 |
T |
|
| Q |
116 |
gttaagtgttacttgaaaagagggttaaggaaaaggaaccatttgctcctggttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttgttg |
215 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47473512 |
gttaagtgttacttgaaaagagggttaaggaataggaaccatttgctcctggttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttgttg |
47473413 |
T |
|
| Q |
216 |
atacagagagct |
227 |
Q |
| |
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|||||||||||| |
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| T |
47473412 |
atacagagagct |
47473401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 47486327 - 47486115
Alignment:
| Q |
16 |
tcactgctgtacaaatagagtggtctctttggactcgcgacattgaggaggagatagttcctctctgcaggttagtttgagttcctctccaagttcattg |
115 |
Q |
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|||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| || ||| ||||||||||||||||| ||||||||| ||| |
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| T |
47486327 |
tcacagctgtacaaatggagtggtctctttggactcgtgacattgaggatgagatagttccactatgccggttagtttgagttcctgtccaagttctttg |
47486228 |
T |
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| Q |
116 |
gttaagtgttacttgaaaagagggttaaggaaaaggaaccatttgctcctggttgcttgtttgtgttaaatgt-----gacttcactaatttaaagcttt |
210 |
Q |
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|||| ||||||||||||||||||||| |||| |||| ||||||| | ||| |||||||||||||||| |||||||| |||||||||||| |
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| T |
47486227 |
attaa--gttacttgaaaagagggttaaagaaatagaactgtttgctctt--ttggatgtttgtgttaaatgttgtactacttcacttatttaaagcttt |
47486132 |
T |
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| Q |
211 |
tgttgatacagagagct |
227 |
Q |
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||||||||||||||||| |
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| T |
47486131 |
tgttgatacagagagct |
47486115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 47476910 - 47476814
Alignment:
| Q |
16 |
tcactgctgtacaaatagagtggtctctttggactcgcgacattgaggaggagatagttcctctctgcaggttagtttgagttcctctccaagttca |
112 |
Q |
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|||| ||| ||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47476910 |
tcacagctttacaaatagagtggtctctctggactcgcgacattgagaacgagatagttcctctctgcaggttagtttgagttcctctccaagttca |
47476814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 44903806 - 44903750
Alignment:
| Q |
168 |
ttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttgttgatacagaga |
224 |
Q |
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|||| |||||||||| |||||||||| |||||||||||| |||||||||| |||||| |
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| T |
44903806 |
ttgcatgtttgtgttgaatgtgactttactaatttaaagtttttgttgatgcagaga |
44903750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 49091666 - 49091610
Alignment:
| Q |
168 |
ttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttgttgatacagaga |
224 |
Q |
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|||| |||||||||| ||||||| || |||||||||||| |||||||||| |||||| |
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| T |
49091666 |
ttgcatgtttgtgttgaatgtgaatttactaatttaaagtttttgttgatgcagaga |
49091610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 17386566 - 17386523
Alignment:
| Q |
184 |
aatgtgacttcactaatttaaagcttttgttgatacagagagct |
227 |
Q |
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| T |
17386566 |
aatgtgacttcactgatttaaagtttttgttgatacagagagct |
17386523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 17225908 - 17225952
Alignment:
| Q |
168 |
ttgcttgtttgtgttaaatgtgacttcactaatttaaagcttttg |
212 |
Q |
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|||| |||||||||| |||||| ||||||||||||||||||||| |
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| T |
17225908 |
ttgcgtgtttgtgttgaatgtggtttcactaatttaaagcttttg |
17225952 |
T |
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