View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4990_low_4 (Length: 442)
Name: NF4990_low_4
Description: NF4990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4990_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 20)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 21 - 432
Target Start/End: Complemental strand, 3935265 - 3934854
Alignment:
| Q |
21 |
tcatccaagttcaagcaattccagaactcaacccttttcttgttttcctttaattgttcagcaacggttgaagggaacaatacagtctttagtgagtcac |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||||||||| |
|
|
| T |
3935265 |
tcatccaagttcaagcaattccagaacttaacttctttcttgttttccttgaattgttcagcaactgttgaagggaacaatacagacttcagtgagtcac |
3935166 |
T |
|
| Q |
121 |
agtcaacaagtagaatttcaactgatgaagaaagctcaggtagagccagaagcttgttggaaaattgtatgtctagttctcttagcctcgtaagattctt |
220 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
3935165 |
agtgaacaagtagaatttcaactgatgaagaaagctcgggtagagccagaagcttgttggaaaatcgtatgtctagttttcttagcctcgtaagattctt |
3935066 |
T |
|
| Q |
221 |
gatgcttgaaggtatgatctcaatgttactagaacttaaatccaggatttcaactgatacaggaaggtcgggtagagccagaatctttgagcaaccgcct |
320 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |||||||| | |
|
|
| T |
3935065 |
gatgcttgaaggtatgatctcaatgttacaacttcttaaatccaggatttcaactgataaaggaagctcgggtagagccagaagctttttgcaaccgcat |
3934966 |
T |
|
| Q |
321 |
atgtgtaactttcttagtcttgtaagatccttgatgcttgaaggtatgctctcaattttagtccatcctaaattcagggtttctagcttgctttgacatc |
420 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| |||||||||||| ||||||||||||| |
|
|
| T |
3934965 |
atgtttaattttcttagtcttgtaagatccttgatgcttgaaggtatgctctcaatttgagtggcttttaaaaccagggtttctagattgctttgacatc |
3934866 |
T |
|
| Q |
421 |
caaatgatgatg |
432 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
3934865 |
caaaagatgatg |
3934854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 3921918 - 3921691
Alignment:
| Q |
20 |
ttcatccaagttcaagcaattccagaactcaacccttttcttgttttcctttaattgttcagcaacggttgaagggaacaatacagtctttagtgagtca |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
3921918 |
ttcatccaagttgaagcaattccagaactcaacccttttcttgttttccttgaattgttcagcaactgttgaagggaacaatacagtctttagtgattca |
3921819 |
T |
|
| Q |
120 |
ca---gtcaacaagtagaatttcaactgatgaagaaagctcaggtagagccagaagcttgttggaaaattgtatgtctagttctcttagcctcgtaagat |
216 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||| |||||| |||||| |||||||||||||||||||| |||||| || || |||||| || ||||||| |
|
|
| T |
3921818 |
cagttgtcaacaagtagactttcaactgatgaaggaagctcgggtagaaccagaagcttgttggaaaatcgtatgtataattttcttagtcttgtaagat |
3921719 |
T |
|
| Q |
217 |
tcttgatgcttgaaggtatgatctcaat |
244 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |
|
|
| T |
3921718 |
tcttgatgcttgaatgtatgctctcaat |
3921691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 4023316 - 4023540
Alignment:
| Q |
20 |
ttcatccaagttcaagcaattccagaactcaacccttttcttgttttcctttaattgttcagcaacggttgaagggaacaatacagtctttagtgagtca |
119 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| ||||| | |
|
|
| T |
4023316 |
ttcatccaagttccagcaattccagaactcaatccttttcttgttttccttgaattgttcagaaactgttgaagggaacaatacagtcttcagtgatcta |
4023415 |
T |
|
| Q |
120 |
cagtcaacaagtagaatttcaactgatgaagaaagctcaggtagagccagaagcttgttggaaaattgtatgtctagttctcttagcctcgtaagattct |
219 |
Q |
| |
|
|| |||||||||||| ||||||||||||||| |||||| |||||| |||| ||||| | ||||| ||||||||| || |||||| || |||||||||| |
|
|
| T |
4023416 |
cattcaacaagtagagtttcaactgatgaaggaagctcgggtagaaccaggagctttgagcaaaatcgtatgtctaattttcttagtcttgtaagattct |
4023515 |
T |
|
| Q |
220 |
tgatgcttgaaggtatgatctcaat |
244 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
4023516 |
tgatgcttgaaggtatgctctcaat |
4023540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 4000400 - 4000653
Alignment:
| Q |
20 |
ttcatccaagttcaagcaattccagaactcaacccttttcttgttttcctttaattgttcagcaacggttgaagggaacaatacagtctttagtgagtca |
119 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| || ||||||||||||||||||||||| ||||| | |
|
|
| T |
4000400 |
ttcatccaagttgaagcaattccagaactcaatccttttcttgttttccttgaattgttcagaaattgttgaagggaacaatacagtcttcagtgatata |
4000499 |
T |
|
| Q |
120 |
cagtcaacaagtagaatttcaactgatgaagaaagctcaggtagagccagaagcttgttggaaaattgtatgtctagttctcttagcctcgtaagattct |
219 |
Q |
| |
|
|| |||||||||||| ||||||||||| ||| |||| ||||||||||||||||||| | || || ||||||||| || |||||| || |||||||||| |
|
|
| T |
4000500 |
cattcaacaagtagagtttcaactgataaaggaagcacaggtagagccagaagctttaagcaatatcgtatgtctaattttcttagtcttgtaagattct |
4000599 |
T |
|
| Q |
220 |
tgatgcttgaaggtatgatctcaatgttactagaacttaaatccaggatttcaa |
273 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| |||||| |||||||||||| |
|
|
| T |
4000600 |
ggatgctagaaggtatgatctcaatttcactctttcttaaaaccaggatttcaa |
4000653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 3808277 - 3808534
Alignment:
| Q |
17 |
actttcatccaagttcaagcaattccagaactcaacccttttcttgttttcctttaattgttcagcaacggttgaagggaacaatacagtctttagtgag |
116 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
3808277 |
actttcatccaagttcttgcaatgccagaactcaacacttttcttgttttccttgaattgttcagcaactgttgaagggaacaatacagtcttcagtgat |
3808376 |
T |
|
| Q |
117 |
tcaca---gtcaacaagtagaatttcaactgatgaagaaagctcaggtagagccagaagcttgttggaaaattgtatgtctagttctcttagcctcgtaa |
213 |
Q |
| |
|
||| | |||||||||| ||||||||||||||| |||||| ||||||| ||||||||| ||| || ||||||||||| || |||||| || |||| |
|
|
| T |
3808377 |
ctacagctgctaacaagtagagtttcaactgatgaaggaagctcgggtagagacagaagctttttgcaaccttgtatgtctaattttcttagtcttgtaa |
3808476 |
T |
|
| Q |
214 |
gattcttgatgcttgaaggtatgatctcaatgttactagaacttaaatccaggatttc |
271 |
Q |
| |
|
||| ||||||||||||||||||| ||||||| ||| | ||||||||| |||| |||| |
|
|
| T |
3808477 |
gatccttgatgcttgaaggtatgctctcaattttagtgtaacttaaattcagggtttc |
3808534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 3815851 - 3816081
Alignment:
| Q |
17 |
actttcatccaagttcaagcaattccagaactcaacccttttcttgttttcctttaattgttcagcaacggttgaagggaacaatacagtctttagtgag |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
3815851 |
actttcatccaagttctcgcaattccagaactcaacacttttcttgttttccttgaattgttcagcaactgttgaagggaacaatacagtcttcagtgaa |
3815950 |
T |
|
| Q |
117 |
tcacagtc---aacaagtagaatttcaactgatgaagaaagctcaggtagagccagaagcttgttggaaaattgtatgtctagttctcttagcctcgtaa |
213 |
Q |
| |
|
| | || |||||||||| ||||||||||||||| |||||| |||| ||||| |||||| | || | |||||||||||| |||||| || |||| |
|
|
| T |
3815951 |
aaagaatctttaacaagtagagtttcaactgatgaaggaagctcgggtaaagccacaagcttcaagcaacctcgtatgtctagttttcttagtcttgtaa |
3816050 |
T |
|
| Q |
214 |
gattcttgatgcttgaaggtatgatctcaat |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3816051 |
gattcttgatgcttgaaggtatgatctcaat |
3816081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 3985240 - 3985464
Alignment:
| Q |
20 |
ttcatccaagttcaagcaattccagaactcaacccttttcttgttttcctttaattgttcagcaacggttgaagggaacaatacagtctttagtgagtca |
119 |
Q |
| |
|
||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||| || |
|
|
| T |
3985240 |
ttcatccaatttgaagcaattccagaactcaatccttttcttgttttcctttaattgttcagcaactgttgaagggaaaaatacagacttcagtgacaca |
3985339 |
T |
|
| Q |
120 |
cagtcaacaagtagaatttcaactgatgaagaaagctcaggtagagccagaagcttgttggaaaattgtatgtctagttctcttagcctcgtaagattct |
219 |
Q |
| |
|
||||||||||||||| |||||| |||||| | ||||||||||||||||||||||| | || |||||||| || |||||| || ||||||| || |
|
|
| T |
3985340 |
cagtcaacaagtagagtttcaagtgatgatggaagctcaggtagagccagaagctccgagcaatcgcttatgtctaattttcttagtcttgtaagatcct |
3985439 |
T |
|
| Q |
220 |
tgatgcttgaaggtatgatctcaat |
244 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
3985440 |
tgatgcttgaaggtatgctctcaat |
3985464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 3957374 - 3957152
Alignment:
| Q |
20 |
ttcatccaagttcaagcaattccagaactcaacccttttctt-gttttcctttaattgttcagcaacggttgaagggaacaatacagtctttagtgagtc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||| |||||| | ||||||| ||||||||||| | ||| || |
|
|
| T |
3957374 |
ttcatccaagttcaagcaattccagaactcaatccttttctttgttttccttgaattgttgagcaacag---aagggaaaaatacagtcttcaatgattc |
3957278 |
T |
|
| Q |
119 |
acagtcaacaagtagaatttcaactgatgaagaaagctcaggtagagccagaagcttgttggaaaattgtatgtctagttctcttagcctcgtaagattc |
218 |
Q |
| |
|
||| |||||||||||| ||||||||||||||| |||||| |||||||||| |||||| | ||||| ||||||||| || |||||| || || |||||| |
|
|
| T |
3957277 |
acattcaacaagtagagtttcaactgatgaaggaagctcgggtagagccacaagctttgagcaaaatcgtatgtctaattttcttagtcttgtgagattc |
3957178 |
T |
|
| Q |
219 |
ttgatgcttgaaggtatgatctcaat |
244 |
Q |
| |
|
|||||||| || |||||| ||||||| |
|
|
| T |
3957177 |
ttgatgctcgacggtatgctctcaat |
3957152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 268 - 432
Target Start/End: Original strand, 3808399 - 3808563
Alignment:
| Q |
268 |
tttcaactgatacaggaaggtcgggtagagccagaatctttgagcaaccgcctatgtgtaactttcttagtcttgtaagatccttgatgcttgaaggtat |
367 |
Q |
| |
|
||||||||||| |||||| |||||||||| ||||| |||| |||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3808399 |
tttcaactgatgaaggaagctcgggtagagacagaagctttttgcaaccttgtatgtctaattttcttagtcttgtaagatccttgatgcttgaaggtat |
3808498 |
T |
|
| Q |
368 |
gctctcaattttagtccatcctaaattcagggtttctagcttgctttgacatccaaatgatgatg |
432 |
Q |
| |
|
||||||||||||||| | | |||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
3808499 |
gctctcaattttagtgtaacttaaattcagggtttctagattgctttgacatccaaaagatgatg |
3808563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 282 - 432
Target Start/End: Original strand, 3985370 - 3985520
Alignment:
| Q |
282 |
ggaaggtcgggtagagccagaatctttgagcaaccgcctatgtgtaactttcttagtcttgtaagatccttgatgcttgaaggtatgctctcaattttag |
381 |
Q |
| |
|
||||| || ||||||||||||| || |||||| ||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3985370 |
ggaagctcaggtagagccagaagctccgagcaatcgcttatgtctaattttcttagtcttgtaagatccttgatgcttgaaggtatgctctcaatttgag |
3985469 |
T |
|
| Q |
382 |
tccatcctaaattcagggtttctagcttgctttgacatccaaatgatgatg |
432 |
Q |
| |
|
| | || |||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3985470 |
tacctcttaaaaccagggtttctagcttgctttgacatccaaaagatgatg |
3985520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 268 - 432
Target Start/End: Original strand, 4023432 - 4023596
Alignment:
| Q |
268 |
tttcaactgatacaggaaggtcgggtagagccagaatctttgagcaaccgcctatgtgtaactttcttagtcttgtaagatccttgatgcttgaaggtat |
367 |
Q |
| |
|
||||||||||| |||||| ||||||||| |||| | |||||||||| | ||||| ||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4023432 |
tttcaactgatgaaggaagctcgggtagaaccaggagctttgagcaaaatcgtatgtctaattttcttagtcttgtaagattcttgatgcttgaaggtat |
4023531 |
T |
|
| Q |
368 |
gctctcaattttagtccatcctaaattcagggtttctagcttgctttgacatccaaatgatgatg |
432 |
Q |
| |
|
||||||||||| | | ||| |||| ||| |||||||| |||||||||||||||| ||||||| |
|
|
| T |
4023532 |
gctctcaatttcactgtatcttaaaaccagtatttctagcctgctttgacatccaaaagatgatg |
4023596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 320 - 432
Target Start/End: Complemental strand, 3921747 - 3921635
Alignment:
| Q |
320 |
tatgtgtaactttcttagtcttgtaagatccttgatgcttgaaggtatgctctcaattttagtccatcctaaattcagggtttctagcttgctttgacat |
419 |
Q |
| |
|
||||| ||| ||||||||||||||||||| ||||||||||||| ||||||||||||||| ||| | |||||||||||||||||| |||||||||||| |
|
|
| T |
3921747 |
tatgtataattttcttagtcttgtaagattcttgatgcttgaatgtatgctctcaatttcagtgtcacttaaattcagggtttctagattgctttgacat |
3921648 |
T |
|
| Q |
420 |
ccaaatgatgatg |
432 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
3921647 |
ccaaaagatgatg |
3921635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 268 - 432
Target Start/End: Complemental strand, 3957260 - 3957096
Alignment:
| Q |
268 |
tttcaactgatacaggaaggtcgggtagagccagaatctttgagcaaccgcctatgtgtaactttcttagtcttgtaagatccttgatgcttgaaggtat |
367 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| || |||||||||| | ||||| ||| |||||||||||||| |||| ||||||||| || ||||| |
|
|
| T |
3957260 |
tttcaactgatgaaggaagctcgggtagagccacaagctttgagcaaaatcgtatgtctaattttcttagtcttgtgagattcttgatgctcgacggtat |
3957161 |
T |
|
| Q |
368 |
gctctcaattttagtccatcctaaattcagggtttctagcttgctttgacatccaaatgatgatg |
432 |
Q |
| |
|
|||||||||| ||| || |||||| |||| |||||||||||| | || ||||||| ||||||| |
|
|
| T |
3957160 |
gctctcaattgcagtgaatactaaatccaggatttctagcttgcctagaaatccaaaagatgatg |
3957096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 432
Target Start/End: Original strand, 3815973 - 3816137
Alignment:
| Q |
268 |
tttcaactgatacaggaaggtcgggtagagccagaatctttgagcaaccgcctatgtgtaactttcttagtcttgtaagatccttgatgcttgaaggtat |
367 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||| || ||| ||||||| | ||||| || ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3815973 |
tttcaactgatgaaggaagctcgggtaaagccacaagcttcaagcaacctcgtatgtctagttttcttagtcttgtaagattcttgatgcttgaaggtat |
3816072 |
T |
|
| Q |
368 |
gctctcaattttagtccatcctaaattcagggtttctagcttgctttgacatccaaatgatgatg |
432 |
Q |
| |
|
| ||||||| | | | ||| |||| ||| |||||||||| |||||||||||||| ||||||| |
|
|
| T |
3816073 |
gatctcaatatcactgtatcttaaaaccagtatttctagctttctttgacatccaaaagatgatg |
3816137 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 432
Target Start/End: Original strand, 4000516 - 4000680
Alignment:
| Q |
268 |
tttcaactgatacaggaaggtcgggtagagccagaatctttgagcaaccgcctatgtgtaactttcttagtcttgtaagatccttgatgcttgaaggtat |
367 |
Q |
| |
|
|||||||||||| |||||| | ||||||||||||| |||| ||||| | ||||| ||| ||||||||||||||||||| || |||||| |||||||| |
|
|
| T |
4000516 |
tttcaactgataaaggaagcacaggtagagccagaagctttaagcaatatcgtatgtctaattttcttagtcttgtaagattctggatgctagaaggtat |
4000615 |
T |
|
| Q |
368 |
gctctcaattttagtccatcctaaattcagggtttctagcttgctttgacatccaaatgatgatg |
432 |
Q |
| |
|
| ||||||||| | || || |||| |||| |||| |||||||||||||||| |||| |||||| |
|
|
| T |
4000616 |
gatctcaatttcactctttcttaaaaccaggatttcaagcttgctttgacatctaaataatgatg |
4000680 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 3936897 - 3936823
Alignment:
| Q |
26 |
caagttcaagcaattccagaactcaacccttttcttgttttcctttaattgttcagcaacggttgaagggaacaat |
101 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3936897 |
caagttccagcaattccagaactcaactctttt-ttgttttcctttaattgttcagcaactgttgaagggaacaat |
3936823 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 3800117 - 3800230
Alignment:
| Q |
27 |
aagttcaagcaattccagaactcaacccttttcttgttttcctttaattgttcagcaacggttgaagggaacaatacagtctttagtgagtcacagtcaa |
126 |
Q |
| |
|
||||||||||||||||| || | || | ||||||||||||||||||||||| ||||||| ||||||||||||||||||| || ||||| | | ||| || |
|
|
| T |
3800117 |
aagttcaagcaattccaaaagttaatcattttcttgttttcctttaattgtccagcaactgttgaagggaacaatacagcattcagtgacttatagtgaa |
3800216 |
T |
|
| Q |
127 |
caagtagaatttca |
140 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
3800217 |
caagtagagtttca |
3800230 |
T |
|
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Target: chr4; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 4217093 - 4217203
Alignment:
| Q |
30 |
ttcaagcaattccagaactcaacccttttcttgttttcctttaattgttcagcaacggttgaagggaacaatacagtctttagtgagtcacagtcaacaa |
129 |
Q |
| |
|
|||||||||||||| || | || | ||||||||||||||||||||||| ||||||| ||||||||||||||||||| || ||||| | | ||| ||||| |
|
|
| T |
4217093 |
ttcaagcaattccaaaagttaatcattttcttgttttcctttaattgtccagcaactgttgaagggaacaatacagcattcagtgacttatagtgaacaa |
4217192 |
T |
|
| Q |
130 |
gtagaatttca |
140 |
Q |
| |
|
||||| ||||| |
|
|
| T |
4217193 |
gtagagtttca |
4217203 |
T |
|
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Target: chr4; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 4008161 - 4008314
Alignment:
| Q |
23 |
atccaagttcaagcaattccagaactcaacccttttcttgttttcctttaattgttcagcaacggttgaagggaacaatacagtctttagtgagtcacag |
122 |
Q |
| |
|
||||| |||||| |||||||| ||| ||||||||||||||||||||| || ||||||| | | ||| |||||||| |||||||||| ||||| ||||| |
|
|
| T |
4008161 |
atccaggttcaaacaattccataacagaacccttttcttgttttccttgaactgttcagaagctgttaaagggaaccatacagtcttcagtgattcacat |
4008260 |
T |
|
| Q |
123 |
tcaacaagtagaatttcaactgatgaagaaagctcaggtagagccagaagcttg |
176 |
Q |
| |
|
||| | | |||| |||||| |||||| | |||||| |||| || | |||||||| |
|
|
| T |
4008261 |
tcagccaatagagtttcaagtgatgatggaagctctggtatagtccgaagcttg |
4008314 |
T |
|
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Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 4016597 - 4016684
Alignment:
| Q |
24 |
tccaagttcaagcaattccagaactcaacccttttcttgttttcctttaattgttcagcaacggttgaagggaacaatacagtctttagtg |
114 |
Q |
| |
|
||||| |||||||||||| ||| ||||||||||| |||| ||||| ||||||||||||| ||||||||||||| |||||||| |||| |
|
|
| T |
4016597 |
tccaatttcaagcaattcgcaaacacaacccttttcctgttctccttgaattgttcagcaa---ttgaagggaacaacacagtcttcagtg |
4016684 |
T |
|
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Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 13396086 - 13396310
Alignment:
| Q |
20 |
ttcatccaagttcaagcaattccagaactcaacccttttcttgttttcctttaattgttcagcaacggttgaagggaacaatacagtctttagtgagtca |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | |||||||||||||||||| |||||||| | ||| |||||||||||| ||||| ||| ||||| | | |
|
|
| T |
13396086 |
ttcatccaagttcaagcaattccaaaactctatccttttcttgttttccttgaattgttcggtaacttttgaagggaacactacagacttcagtgactta |
13396185 |
T |
|
| Q |
120 |
cagtcaacaagtagaatttcaactgatgaagaaagctcaggtagagccagaagcttgttggaaaattgtatgtctagttctcttagcctcgtaagattct |
219 |
Q |
| |
|
|| ||||||| |||| |||||| |||||||| |||| |||||| |||||||||||| | | ||||||||||||||| ||||| | | |||||||| |
|
|
| T |
13396186 |
cattcaacaattagagtttcaagtgatgaaggaagcacaggtacagccagaagctttgagcagaattgtatgtctagtactcttcgtcgtgtaagattga |
13396285 |
T |
|
| Q |
220 |
tgatgcttgaaggtatgatctcaat |
244 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
13396286 |
tgatgcttgaaggtatactctcaat |
13396310 |
T |
|
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