View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4990_low_5 (Length: 343)
Name: NF4990_low_5
Description: NF4990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4990_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 44769344 - 44769023
Alignment:
| Q |
1 |
tttagaggtcttacatcgcgattgttagttaactctaagattcttttctaagaaactcatcaaattgtgatacattcatcttgttgcacgttagtggaag |
100 |
Q |
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| T |
44769344 |
tttagaggtcttacatcgcgattgttagttaactctaagattcttttctaagaaactcatcaaattgttatacattcatcttattgcacgttagtggaag |
44769245 |
T |
|
| Q |
101 |
aggtcaagaatatgatagatatatactatgttgtgaacaagctcaacactttcaatcgtnnnnnnnccaagtcataattaactcaaatttagcaaatcaa |
200 |
Q |
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| T |
44769244 |
aggtcaagaatatgatagatatatgctatgttgtgaacaagctcaacactttcaatcgtaaaaaaaccaagtcataattaactcaaatttagcaaatcaa |
44769145 |
T |
|
| Q |
201 |
ctgaagcaggctgattgcatagaccaaaagtacatgtttaacattaagatgtgattaaaaacaaacaaaacaactcattaatttctagttcttgagacga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44769144 |
ctgaagcaggctgattgcatagaccaaaagtacatgtttaacattaagatgtgattaaaaacaaacaaaacaactcattaatttctagttcttgagacga |
44769045 |
T |
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| Q |
301 |
gaaaaccttggtccttaagaca |
322 |
Q |
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||||||||||||||||||||| |
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| T |
44769044 |
caaaaccttggtccttaagaca |
44769023 |
T |
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