View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4990_low_7 (Length: 315)
Name: NF4990_low_7
Description: NF4990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4990_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 6586527 - 6586808
Alignment:
| Q |
1 |
acttaagactttaaaactcacaaagaggagacttcaaaacaaccagattctaagaaagaatctgcatgtaggctaaaatttgctggtcaattgtagtctt |
100 |
Q |
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| T |
6586527 |
acttaagactttaaaactcacaaagaggagacttcaaaacaaccagattct-------------catataggctaaaatttgctggtcaattgtagtct- |
6586612 |
T |
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| Q |
101 |
cacacgaaatgtaaataacataagtatgtcaatctcatcgaatgatctcttaaataagtcaaaccaaagaaagaatggtttcattaatcttattattgtt |
200 |
Q |
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| T |
6586613 |
cacaccaaatgtaaataacatgagtatgtcaatctcatcgaatgatctcttaaataagtcaaaccaaagaaagaatggtttcattaatcttattattgtt |
6586712 |
T |
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| Q |
201 |
aacaatcatatcctgatatccataaacacattcgagtaaatctcaacaatcaaatgagataaaccatctctccaaattatatcaaacccaaccata |
296 |
Q |
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| T |
6586713 |
aacaattatatcctgatatccataaacacattcgagtaaatctcaacaatcaaatgagataaaccatctctccaaattatatcaaacccaaccata |
6586808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 24191173 - 24191107
Alignment:
| Q |
114 |
aataacataagtatgtcaatctcatcgaatgatctcttaaataagtcaaaccaaagaaagaatggtt |
180 |
Q |
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| T |
24191173 |
aataacttaagtatgtcaatctcatcgaaagatcccttgaatacgccaaaccaaagaaggaatggtt |
24191107 |
T |
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