View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4990_low_8 (Length: 302)
Name: NF4990_low_8
Description: NF4990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4990_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 43060546 - 43060280
Alignment:
| Q |
14 |
aaatagtcagaaatcaaattgtgaattgattgtggttgaaagtatgaactatatttgtaagtttgtcccgtttgaatggaaatggtaagttagtttgaag |
113 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43060546 |
aaatagtcagaaagcaaattgtgaattgattgtggttgaaagtatgaactatatttttaagtttgtcccgtttgaatggaaatggtaagttagtttgaag |
43060447 |
T |
|
| Q |
114 |
ttgaaagtggaacaaaacgagaatttgagcactctttagaatagatatgtgactaactttttgcaaattctaacaatgactattttattatttctagaca |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43060446 |
ttgaaagtggaacaaaacgaaaatttgagcactcttttgaatagatatgtgactaactttttgcaaattctaacaatgactattttattatttctggaca |
43060347 |
T |
|
| Q |
214 |
aacaacaattcaagtttgaggttatggtaattggtaacatctaatcatatgatattttcttgagtat |
280 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43060346 |
aacaacaattcaagtttgaggttatgataattggtaacatctaatcatatgatattttcttgagtat |
43060280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University