View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4991_low_2 (Length: 259)
Name: NF4991_low_2
Description: NF4991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4991_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 3887825 - 3887593
Alignment:
| Q |
18 |
ctttgttccctattgagtttacttttgggttattttacacttaattaaaaaa-ctgtacaataaatgaagtttaataatcttgttgcgaattggaactta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| ||||||| |
|
|
| T |
3887825 |
ctttgttccctattgagtttacttttgggttattttacacttaattaaaaaaactgtacaataaattaagtttaataattttgttgcgaattcgaactta |
3887726 |
T |
|
| Q |
117 |
aatcacaccaa---------atatatagagtaagtattattgaaaaccaaacttatagacagactcaaacaataataacaacaaaacctcctcctcgagg |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3887725 |
aatcacaccaataaacttaaatatatagagtaagtattattgaaaaccaaacttatagacagactcaaacaataataacaacaaaacctcctcctcgagg |
3887626 |
T |
|
| Q |
208 |
ttacatgttcgattctctccagtgtcaatttag |
240 |
Q |
| |
|
| | ||||| ||||||||||||| |||||||| |
|
|
| T |
3887625 |
tcatatgtttgattctctccagttccaatttag |
3887593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 36720430 - 36720475
Alignment:
| Q |
195 |
ctcctcctcgaggttacatgttcgattctctccagtgtcaatttag |
240 |
Q |
| |
|
||||||||||||||| || ||||||||||||| ||||||||||||| |
|
|
| T |
36720430 |
ctcctcctcgaggtttcaggttcgattctctctagtgtcaatttag |
36720475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 17439966 - 17440011
Alignment:
| Q |
195 |
ctcctcctcgaggttacatgttcgattctctccagtgtcaatttag |
240 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
17439966 |
ctcctcctcgaggtctcatgtttgattctctccagtgtcaatttag |
17440011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 17745283 - 17745238
Alignment:
| Q |
195 |
ctcctcctcgaggttacatgttcgattctctccagtgtcaatttag |
240 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
17745283 |
ctcctcctcgaggtctcatgttcgattctctctggtgtcaatttag |
17745238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 24047129 - 24047084
Alignment:
| Q |
195 |
ctcctcctcgaggttacatgttcgattctctccagtgtcaatttag |
240 |
Q |
| |
|
||||||||||||||| || ||||||||||| |||||| |||||||| |
|
|
| T |
24047129 |
ctcctcctcgaggtttcaagttcgattctccccagtgccaatttag |
24047084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 9626081 - 9626126
Alignment:
| Q |
195 |
ctcctcctcgaggttacatgttcgattctctccagtgtcaatttag |
240 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
9626081 |
ctcctcctcgaggtctcatgttcgattctctccggtgtcaacttag |
9626126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University