View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4991_low_4 (Length: 203)
Name: NF4991_low_4
Description: NF4991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4991_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 39035672 - 39035839
Alignment:
| Q |
18 |
aaaatttcctcatttgttttgaaagtctgaaacatgtgtttcattataattcattctcgtataaattcctgtcgcatattatcattacatattgcgatgg |
117 |
Q |
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| T |
39035672 |
aaaatttcctcatttgttttgaaagtctgacacacatgtttcattataattc----tcgtataaattcctgtcgcatgttatcattacatattgcgatgg |
39035767 |
T |
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| Q |
118 |
aaattgcttgatatatcgaaagataccatcaataagcaaaacgnnnnnnntttcattagccgttgacctatg |
189 |
Q |
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| T |
39035768 |
aaattgcctgatatattgaaagataccatcaataagcaaaacgaaaaaaatttcattagccgttgacctatg |
39035839 |
T |
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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 39035546 - 39035610
Alignment:
| Q |
95 |
attatcattacatattgcgatggaaattgcttgatatatcgaaagataccatcaataagcaaaac |
159 |
Q |
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| T |
39035546 |
attatcgttacatattgcaatcgaaattgcttgatatagcgaaagatattatcactaagaaaaac |
39035610 |
T |
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