View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4992-Insertion-1 (Length: 1007)
Name: NF4992-Insertion-1
Description: NF4992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4992-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 912; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 912; E-Value: 0
Query Start/End: Original strand, 7 - 999
Target Start/End: Complemental strand, 52268592 - 52267594
Alignment:
| Q |
7 |
aggtgggattgtacctggtgttggcgctagatttgttaagaacaatgttattttcttgccttgtttgagggaaaagcatgataacccatatatggatgta |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52268592 |
aggtgggattgtacctggtgttggcgctagatttgttaagaacaatgttattttcttgccttgtttgagggaaaagcatgataacccatatatggatgta |
52268493 |
T |
|
| Q |
107 |
gtaagttacttggccttggtaaatttgaaagtaggataaccttatttttaaatatatgtaaatcagaaaaaagggttattatgttgaattattacacaca |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
52268492 |
gtaagttacttggccttggtaaatttgaaagtaggataaccttatttttaaatatatgtaaatcagaacaaagggttattatgttgaattattacgcaca |
52268393 |
T |
|
| Q |
207 |
atttggattgtgtatggtagtttcggaatgaattaaaccctacagaaggggtatctgcctggtattgctggcatttacttgcaagatcattatttatgtc |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52268392 |
atttggattgtgtatggtagtttcggaatgaattaaaccctacagaaggggtatctgcctggtattgctggcatttacttgcaagatcattatttatgtc |
52268293 |
T |
|
| Q |
307 |
aattttttgctatccactgttaccagtttgacgattacctcttt--attttaattttaaggttggattcctagccatgaaatcgttagttactggttatc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52268292 |
aattttttgctatccactgttaccagtttgacgattacctctttttattttaattttaaggttggattcctagccatgaaatcgttagttactggttatc |
52268193 |
T |
|
| Q |
405 |
cgattcccggttcatgttgtcagccctgttttgttacataagcttcatattaaaaagataataacaaagaatactgataagagtacaaagaatctcttcc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52268192 |
cgattcccggttcatgttgtcagccctgttttgttacataagcttcatattaaaaagataataacaaagaatactgataagagtacaaagaatctcttcc |
52268093 |
T |
|
| Q |
505 |
aatagttcaaaactccttaaggattttaatttccagtccagccagtcaaccctatatgccatcatgcctaacaaaacagcctcttattggctcattctaa |
604 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52268092 |
aatagttcaaaactccttaaggattttaattctcagtccagccagtcaaccctctatgccatcatgcctaacaaaacagcctcttattggctcattctaa |
52267993 |
T |
|
| Q |
605 |
ctattgcacaagcatactaaccgacctgccaccttagaggttagtatttcttttactaccaattttcctcttcctagaaaaactaaccaagtcctggaat |
704 |
Q |
| |
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|||||||||||||||||||||| |||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52267992 |
ctattgcacaagcatactaaccaacctgccagcttaggggttagtatttctcttactaccaattttcctcttcctagaaaaactaaccaagtcctggaat |
52267893 |
T |
|
| Q |
705 |
ttttgggtttgagtccacatcttaaacagtactagcggcattaaatgctcgttgttttttcacagttttgaaaatctttcaaggtcaaattttatattat |
804 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52267892 |
tattgggtttgagtccacatcttaaacagtactagcggcattaaatgctcgttgttttttcacagttttgaaaatctttcaaggtcaaattttatattat |
52267793 |
T |
|
| Q |
805 |
tctttagttttagatttcaacaagttttacaaataatgtcaaattggtctttaaataacaatgcaaactacaacgcagttgtttaagatggtaagacgat |
904 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
52267792 |
tctttagttttagatttcaacaagttttacaaataatgtcaaattggtctttaaataacaatgcaaactacaatgcagttgtttaagatggtaagacgat |
52267693 |
T |
|
| Q |
905 |
aatttactttagcttt-aaaagacattacttttgtaccaagcatg-aaaattagcatacttatggcaagtt-aatcatcat-aaaatccaagcatgaaa |
999 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
52267692 |
aatttactttagctttaaaaagacattacttttgtaccaagcatgaaaaattagcatacttatggcaagttaaatcatcataaaaatccaagcatgaaa |
52267594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 38
Target Start/End: Complemental strand, 52268672 - 52268641
Alignment:
| Q |
7 |
aggtgggattgtacctggtgttggcgctagat |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
52268672 |
aggtgggattgtacctggtgttggcgctagat |
52268641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 360 - 704
Target Start/End: Original strand, 13745970 - 13746312
Alignment:
| Q |
360 |
ttaaggttggattcctagccatgaaatcgttagttactggttatccgattcccggttcatgttgtcagccctgttttgttacataagcttcatattaaaa |
459 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| | |||||| ||||||||| |
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| T |
13745970 |
ttaaggttggattgctagccatgaaatcgttagttaccggttatccgattcccggttcatgttgtcagccctgctttgttaaacaagctttatattaaaa |
13746069 |
T |
|
| Q |
460 |
agataataacaaagaatactgataagagtacaaagaatctcttccaatagttcaaaactccttaaggattttaatttccagtccagccagtcaaccctat |
559 |
Q |
| |
|
||||||||| |||| ||||||||||||| ||||||||||||||| |||||||||| |||||||||||||| |||| |||||||| |||||||||| ||| |
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|
| T |
13746070 |
agataataagaaagcatactgataagagcacaaagaatctcttctaatagttcaaggctccttaaggattt-aattcccagtccaaccagtcaacc-tat |
13746167 |
T |
|
| Q |
560 |
atgccatcatgcctaacaaaacagcctcttattggctcattctaactattgcacaagcatactaaccgacctgccaccttagaggttagtatttctttta |
659 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| |
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| T |
13746168 |
atgccatcatgcctaacaaaacagcctcttattggctcattctaactattgcacaagcatactaaccaacctgccaacttagaggttagtatttctctta |
13746267 |
T |
|
| Q |
660 |
ctaccaattttcctcttcctagaaaaactaaccaagtcctggaat |
704 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
13746268 |
ctaccaactttcctcttcccagaaaaactaaccaagtcctggaat |
13746312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 13745595 - 13745926
Alignment:
| Q |
13 |
gattgtacctggtgttggcgctagatttgttaagaacaatgttattttcttgccttgtttgagggaaaagcatgataacccatatatggatgtagtaagt |
112 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||| || |||| || ||| ||| |||||||| |
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| T |
13745595 |
gattgtaccaggtgttggcgctagattggttaagaactgtgttatttccttgccttgtttgagggaaaagcaagagaacctatttatagatatagtaagt |
13745694 |
T |
|
| Q |
113 |
tacttggccttggtaaatttgaaagtaggataaccttatttttaaatatatgtaaatcagaaaaaagggttattatgttgaattattacacacaatttgg |
212 |
Q |
| |
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|| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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|
| T |
13745695 |
tatctggccttgctaaatttgaaagtaggataaccttatttt-aaatatatgtaaatcagaaaa-agggttattatgttgaattattacgcacaatttgg |
13745792 |
T |
|
| Q |
213 |
attgtgtatggtagtttcggaatgaattaaaccctacagaaggggtatctgcctggtattgctggcatttacttgcaagatcattatttatgtcaatttt |
312 |
Q |
| |
|
|| |||||||| |||||| ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
13745793 |
atcgtgtatggaagtttcagaatgaattaaaccctacagaagggatatctgccaggtattgctggtgtttacttgcaagatcattatttatggcaatttt |
13745892 |
T |
|
| Q |
313 |
ttgctatccactgttaccagtttgacgattacct |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
13745893 |
ttgctatccactgttaccagtttgacgattacct |
13745926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 925 - 975
Target Start/End: Original strand, 51823360 - 51823411
Alignment:
| Q |
925 |
gacattacttttgtaccaagcatgaaaa-ttagcatacttatggcaagttaa |
975 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51823360 |
gacattacttttgtacgaagcatgaaaaattagcatacttatggcaagttaa |
51823411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 921 - 975
Target Start/End: Complemental strand, 32593942 - 32593887
Alignment:
| Q |
921 |
aaaagacattacttttgtaccaagcatg-aaaattagcatacttatggcaagttaa |
975 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||| |
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|
| T |
32593942 |
aaaatacattacttttgtaccatgcatgaaaaattagcaaacttatggcaagttaa |
32593887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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