View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4992-Insertion-2 (Length: 934)
Name: NF4992-Insertion-2
Description: NF4992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4992-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 408 - 915
Target Start/End: Original strand, 48952659 - 48953179
Alignment:
| Q |
408 |
atcaagagaatagaatagttagatcagctgggagaactaagaccatcccagccagcgaaatcccgcatataattaattaaaatctactaagcaaaatcac |
507 |
Q |
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| T |
48952659 |
atcaagagaatagaatagttagatcagctgggagaactaagaccatcccagccagcgaaatcccgcatataat----taaaatctactaagcaaaatcac |
48952754 |
T |
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| Q |
508 |
acaaagggatagatgcaatgaagttcgaaaggaccctccatggtacacactgaagtttgagacaagttataacacacctggtctaaatcctatcaaagag |
607 |
Q |
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| T |
48952755 |
acaaagggatagatgcaatgaagttcgaaaggaccccccatggtacacgctgaagtttgagacaagatataacacacctggtctaaatcctatcaaagag |
48952854 |
T |
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| Q |
608 |
aagttgtcgagagaaaaggctaaccttagttgtggtaggattccaaatatgctagatagaaaacaaag----------------gattcttctgggtgta |
691 |
Q |
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| T |
48952855 |
aagttgtcaagagaaaaggctaaccttagttgtggtaggattccaaatatgctagatagaaaacaaaggattcttcctccacaagattcttctgggtgta |
48952954 |
T |
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| Q |
692 |
ggtgttgccttgcaagcaatgaacaagtagattttacctacaagattcctcaacttatttatattagaactaattgccttgcatagcaaattacattttt |
791 |
Q |
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| T |
48952955 |
agtgttgccttgcaagcaatgaacaagtagattttacctacaagattcctcaacttatttatattagaactaattgccttgcatagcaaattacattttt |
48953054 |
T |
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| Q |
792 |
ggaacattaaaaaatatgatacagaatataatggaatatgatccaatgcattttatcccatttcagataatacactttttattgtgtcaataatcgtttt |
891 |
Q |
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| T |
48953055 |
ggaacattaaaaaatatgatacagaacataatggaatatgatccaatgcattttatcccatttcagatgatacactttttattgtgtcaataatcgtttt |
48953154 |
T |
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| Q |
892 |
tgggttc-atatagggttaaactag |
915 |
Q |
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| T |
48953155 |
tgggttcaatatagggttaaactag |
48953179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 185 - 369
Target Start/End: Original strand, 48952453 - 48952637
Alignment:
| Q |
185 |
cacccccatttaatatagatattttcaacaacaacaagggttaatattagaaaggaaacacaacggatatactaacataaaatacaagagatcaatgtca |
284 |
Q |
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| T |
48952453 |
cacccccatttaatatagatattttcaacaacaacaagagttaatattagaaaggaaacataacggatatactaacataaaatacaagagatcaatgtca |
48952552 |
T |
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| Q |
285 |
tcacaatctatctagatacaactcatctagaactcgtcacttgaaagaaatttaactctttctagagaagatacaatcattccaa |
369 |
Q |
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| T |
48952553 |
tcacaatctatctagatacaactcatctagaactcgtcacttgaaagaaatttaactctttctagagaagatacaatcattccaa |
48952637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 48952276 - 48952385
Alignment:
| Q |
8 |
ataccatgttgaaattactgtggcaaaactaaatagatattctaatagagagagttatacttttataggtgaaatgcataatgtgaactcctaaaattaa |
107 |
Q |
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| T |
48952276 |
ataccatgttgaaattactgtggcaaaactaaatagatattctaatagagagagttatacttttataggagaaatgcataatgtgaactcctaaaattaa |
48952375 |
T |
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| Q |
108 |
gcaatgacat |
117 |
Q |
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| T |
48952376 |
gcaatgacat |
48952385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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