View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4992-Insertion-3 (Length: 657)
Name: NF4992-Insertion-3
Description: NF4992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4992-Insertion-3 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 646; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 8 - 657
Target Start/End: Original strand, 2755762 - 2756411
Alignment:
| Q |
8 |
caaccaccccattatggcagaatctttgccaaaaccagtaaaatgatccttgataaaagcgtgttgatgaacatgagtcaccgtatccgtccgttcgggg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2755762 |
caaccaccccattatggcagaatctttgccaaaaccagtaaaatgatccttgataaaagcgtgttgatgaacatgagtcaccgtatccgtccgttcgggg |
2755861 |
T |
|
| Q |
108 |
gctgcattagaccagtatgcatgttataaagttcaatgaaaacagaaaaatattaagattacaccataactgatcaaatttgttaatttactttgtgatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2755862 |
gctgcattagaccagtatgcatgttataaagttcaatgaaaacagaaaaatattaagattacaccataactgatcaaatttgttaatttactttgtgatt |
2755961 |
T |
|
| Q |
208 |
gattgttttcatctgcaacaattgagtcttcccagcgcttccaccgacgaatctattaacaacgacaatactaattaaaaacgaagatcttttaacaaac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2755962 |
gattgttttcatctgcaacaattgagtcttcccagcgcttccaccgacgaatctattaacaacgacaatactaattaaaaacgaagatcttttaacaaac |
2756061 |
T |
|
| Q |
308 |
acaatttgtttagtaaaaagcatataaattagatactcacatttaatcctccaaaaacaatagtcaaaacacatgaagtcacatgaacaacagctagaac |
407 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2756062 |
acaatttgtttagtaaaaagcatatgaattagatactcacatttaatcctccaaaaacaatagtcaaaacacatgaagtcacatgaacaacagctagaac |
2756161 |
T |
|
| Q |
408 |
aaaaataaagatatgcagtttatgcaatgcttccacagataatagaggcacctttccctgaaaataacatcataataatacaaaatatgattaaagtgga |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2756162 |
aaaaataaagatatgcagtttatgcaatgcttccacagataatagaggcacctttccctgaaaataacatcataataatacaaaatatgattaaagtgga |
2756261 |
T |
|
| Q |
508 |
aaagatgattaattcaccaaatcaaaattctctaaataacatcaagagaataaacatgataagactgcaatcgtaatttaaaaccttgaacaaaatgtaa |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2756262 |
aaagatgattaattcaccaaatcaaaattctctaaataacatcaagagaataaacatgataagactgcaatcgtaatttaaaaccttgaacaaaatgtaa |
2756361 |
T |
|
| Q |
608 |
aggaccataacatgtaatttcaataccttggcagtacagtatccaatttc |
657 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2756362 |
aggaccataacatgtaatttcaataccttggcagtacagtatccaatttc |
2756411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 543
Target Start/End: Original strand, 2747725 - 2748255
Alignment:
| Q |
15 |
cccattatggcagaatctttgccaaaaccagtaaaatgatccttgataaaagcgtgttgatgaacatgagtcaccgtatccgtccgttcgggggctgcat |
114 |
Q |
| |
|
|||||||| ||| ||| ||||||||||||||||||| ||| ||| ||||||| || |||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
2747725 |
cccattatagcataatttttgccaaaaccagtaaaacgattctttataaaagaatgctgatgaacatgagtcaccgtatccgtccattcgggtgctgcat |
2747824 |
T |
|
| Q |
115 |
tagaccagtatgcatgttataaagttcaatgaaaacagaaaaatattaagat--tacaccataactgatcaaatttgttaatttactttgtgattgattg |
212 |
Q |
| |
|
|||||| ||||| || ||||||||| |||||| |||||||| ||| ||||| ||||||||||| ||||||||||||| | | |||||||| || | |
|
|
| T |
2747825 |
tagaccggtatggataatataaagtttaatgaagacagaaaa-tatcaagatattacaccataaccgatcaaatttgtttacc-atgttgtgattcatgg |
2747922 |
T |
|
| Q |
213 |
ttttcatctgcaacaattgagtcttcccagcgcttccaccgacgaatctattaacaacgacaatactaattaaaaacgaagatcttttaacaaacacaat |
312 |
Q |
| |
|
||||||||||||||||| || | ||||||| ||||||| |||||||||||||||| || | ||||| ||||| || ||||| |||| || |||||||| |
|
|
| T |
2747923 |
ttttcatctgcaacaatagaattttcccagggcttccatcgacgaatctattaacgacaatgatacttattaataaagaagagtttttcacgaacacaat |
2748022 |
T |
|
| Q |
313 |
ttgtt-tagtaaaaagcatataa----attagatactcacatttaatcctccaaaaacaatagtcaaaacacatgaagtcacatgaacaacagctagaac |
407 |
Q |
| |
|
||||| || ||||||| |||| | |||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||| || |
|
|
| T |
2748023 |
ttgttataataaaaagtatatgattagattagatactcacatttagtcctccaaaaataatagtcaaaacacaagaagtcacatgaacaatagctaggac |
2748122 |
T |
|
| Q |
408 |
aaaaataaagatatgcagtttatgcaatgcttccacagataatagaggcacctttccctgaaaataacatcataataatacaaaatatgattaaagtgga |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| ||||||||||||||||||||| | |
|
|
| T |
2748123 |
aaaaataaagatatgcagtttatgcaatgcttccacagataatagaggtacttttccctgaaaataa---cataatcatacaaaatatgattaaagtgaa |
2748219 |
T |
|
| Q |
508 |
aaagatgattaattcaccaaatcaaaattctctaaa |
543 |
Q |
| |
|
|| |||||||| ||| |||||||||||| |||||| |
|
|
| T |
2748220 |
taaaatgattaaatcatcaaatcaaaattgtctaaa |
2748255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 6e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 2373016 - 2373141
Alignment:
| Q |
12 |
caccccattatggcagaatctttgccaaaaccagtaaaatgatccttgataaaagcgtgttgatgaacatgagtcaccgtatccgtccgttcgggggctg |
111 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2373016 |
caccccattatagcagaatcattgccaaaaccagtaaaatgatccttgataaaagcatgttgatgaacatgagtcaccgtatccatccgttcgggggctg |
2373115 |
T |
|
| Q |
112 |
cattagaccagtatgcatgttataaa |
137 |
Q |
| |
|
|||||||| |||||||| ||||||| |
|
|
| T |
2373116 |
cattagacttgtatgcatattataaa |
2373141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 14208527 - 14208575
Alignment:
| Q |
45 |
gtaaaatgatccttgataaaagcgtgttgatgaacatgagtcaccgtat |
93 |
Q |
| |
|
||||||||||||||||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
14208527 |
gtaaaatgatccttgatgaaagaatgtagatgaacatgagtcaccgtat |
14208575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University