View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4992_high_1 (Length: 634)
Name: NF4992_high_1
Description: NF4992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4992_high_1 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 495; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 15 - 634
Target Start/End: Complemental strand, 2755510 - 2754878
Alignment:
| Q |
15 |
tagactcagtgaaggggaaatccgaagtttaatttgcacaagtacatgaagcgtgcgctggaagatgatttcaagaaagatggcgggattaggtatgcgc |
114 |
Q |
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| T |
2755510 |
tagactcattgtaggggaaatccgaagtttaattttcacaagtacatgaaccgtgcgcttgaagatgatttcaagaaagttgtcggtattaggtatgcgc |
2755411 |
T |
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| Q |
115 |
ttctatcaaggttctatatttactacgatcttcatcaggaatttattggacaaattgtctttgttcagcctatagtgtaaagttatgtattctttgttgt |
214 |
Q |
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| T |
2755410 |
ttctatcaagtttctatatttactacaatcttcatcagtaatttattggccaaattttctttgttcagcctatagtgtaaagttatgtattctttgttgt |
2755311 |
T |
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| Q |
215 |
cactaattcaccattttattttaatggttgcagttggtatctttggatctttgtggtcatatttttgttgcttaatgtcaatggtatgcttccagacttg |
314 |
Q |
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| T |
2755310 |
cattaattcaccattttattttaatggttgcagttggtatctttggatctttgtggtcatatttttgttgcttaatgtcaatggtatgcttccagacttg |
2755211 |
T |
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| Q |
315 |
gtacttttgttc--tgtctcaacttaattacctatattgtctaccttaagacatatgattattattgtagataacattgttttacaaaccaaag------ |
406 |
Q |
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| T |
2755210 |
gtacttttgttctttgtctcaactcaattacctatattttctaccttaagacatatgattattattgtagataacattgttttacaaaccaaagcgaccg |
2755111 |
T |
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| Q |
407 |
---ctacctgttgaattggcttaatcccggttatagtagagtctcgttgaactggtctgagtcgtagtttgtttgatctccgttctgattgattttttaa |
503 |
Q |
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| T |
2755110 |
gttcaaccggttgaattggcttaatcctggttatagtagagtctcgttgaactggtccgagtcgtagtttgtttgatctccgttctgattgattttttaa |
2755011 |
T |
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| Q |
504 |
acattgagagata--atatcttgtaattaagcactagtgtgatgagttatttacaaacctatatgaacaatagaagtcacaattatgtaattttccaatc |
601 |
Q |
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| T |
2755010 |
acattgagagataatatatcttgtaattaagcactagtgtgatgagttatttacaaacctatatgaacaatagaagtcacaattatgcaattttccaatc |
2754911 |
T |
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| Q |
602 |
aaaattaagatttctgttcatggtttcaggttg |
634 |
Q |
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| T |
2754910 |
aaaattaagatttctgttcatggtttcaggttg |
2754878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 165 - 302
Target Start/End: Complemental strand, 2747301 - 2747164
Alignment:
| Q |
165 |
caaattgtctttgttcagcctatagtgtaaagttatgtattctttgttgtcactaattcaccattttattttaatggttgcagttggtatctttggatct |
264 |
Q |
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| T |
2747301 |
caaattttctttgtgcaacttatattgtaatgttgttgattctctcttgtcactaactcaccattttattttaatggttgcagttggtatctttggatct |
2747202 |
T |
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| Q |
265 |
ttgtggtcatatttttgttgcttaatgtcaatggtatg |
302 |
Q |
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| T |
2747201 |
ttgtggtcatatttatgttgcttaatatcaatggtatg |
2747164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 566 - 634
Target Start/End: Complemental strand, 2747150 - 2747079
Alignment:
| Q |
566 |
gaacaatagaagtcacaattatgtaattttccaa---tcaaaattaagatttctgttcatggtttcaggttg |
634 |
Q |
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| T |
2747150 |
gaacaatagaagtcacaattatgtcattgtccaacaatcaaaattaagatttatgtttattgtttcaggttg |
2747079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 2747461 - 2747394
Alignment:
| Q |
15 |
tagactcagtgaaggggaaatccgaagtttaatttgcacaagtacatgaagcgtgcgctggaagatga |
82 |
Q |
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| T |
2747461 |
tagactcattgtaggggaaatccaaagtttaattttcacaagtacatgatccgtgcacttgaagatga |
2747394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 231 - 305
Target Start/End: Original strand, 55322485 - 55322559
Alignment:
| Q |
231 |
tattttaatggttgcagttggtatctttggatctttgtggtcatatttttgttgcttaatgtcaatggtatgctt |
305 |
Q |
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| T |
55322485 |
tattttcatggttgcagttggtatctttggctctttgtggtcatcttcttgttgttaaatatcaatggtatgctt |
55322559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 55322262 - 55322312
Alignment:
| Q |
39 |
aagtttaatttgcacaagtacatgaagcgtgcgctggaagatgatttcaag |
89 |
Q |
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| T |
55322262 |
aagtttaattttcacaagtacatgattcgtgcccttgaagatgatttcaag |
55322312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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