View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4992_low_2 (Length: 435)
Name: NF4992_low_2
Description: NF4992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4992_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 7e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 41183504 - 41183321
Alignment:
| Q |
10 |
aagaatatccaggtataaatttacacatacagttgttttattcgtgttttaattaatttcatcaccctttttaatattttttgtggtttctatagacaaa |
109 |
Q |
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| T |
41183504 |
aagagtatccaggtataaatttacacatacagttgttttattcgtgttttaattaatttcatcaccctttttaataatttttgtggtttctatagacaaa |
41183405 |
T |
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| Q |
110 |
gtcagggtatatagttgattgtgttgatattcacaaacaaccagcttttgatcatcctttactaaaaaatcataaattacaggt |
193 |
Q |
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| T |
41183404 |
gtcagggtatatagttgattgtgttgatattcacaaacaaccagcttttgatcatcttttactaaaaaatcataagttacaggt |
41183321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 279 - 419
Target Start/End: Complemental strand, 41183235 - 41183095
Alignment:
| Q |
279 |
gttgtagagaaaaccaacttttgaaagaaaaattaatgaaacaagtgcagcgacttcaccaactaaatatatatacgggtttgagaaggttagatgtcca |
378 |
Q |
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| T |
41183235 |
gttgtagagaaaaccaacttttgaaagaaaaattaatgaaacaagtgcagcgacttcaccaactaaacatgcatacgggtttgagaaggttagatgtcca |
41183136 |
T |
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| Q |
379 |
aaaggaactgtccctattcggaggataatcaaagatgatct |
419 |
Q |
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| T |
41183135 |
aaaggaactgtccctattcggaggataatcaaagatgatct |
41183095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 40297603 - 40297497
Alignment:
| Q |
87 |
tttttgtggtttctatagacaaagtcagggtatatagttgattgtgttgatattcacaaacaaccagcttttgatcatcctttactaaaaaatcataaat |
186 |
Q |
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| T |
40297603 |
ttttggtggttttaatagacaaaattcggatacatagttgattgcattgatattgacaagcaggcagctttcgaccatcctttattaaagaatcataaat |
40297504 |
T |
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| Q |
187 |
tacaggt |
193 |
Q |
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||||||| |
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| T |
40297503 |
tacaggt |
40297497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 87 - 195
Target Start/End: Original strand, 50198868 - 50198976
Alignment:
| Q |
87 |
tttttgtggtttctatagacaaagtcagggtatatagttgattgtgttgatattcacaaacaaccagcttttgatcatcctttactaaaaaatcataaat |
186 |
Q |
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| T |
50198868 |
ttttggtggttactatagacaaagtctggatacacaattgattgtgttgatatttacaaacaaccagcttttgatcatcctttattaaaaaatcataagt |
50198967 |
T |
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| Q |
187 |
tacaggtaa |
195 |
Q |
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| T |
50198968 |
tgcaggtaa |
50198976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 26005316 - 26005252
Alignment:
| Q |
120 |
atagttgattgtgttgatattcacaaacaaccagcttttgatcatcctttactaaaaaatcataa |
184 |
Q |
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| T |
26005316 |
atagttgattgtattgacattcacaaacaattggcttttgatcatcctttattaaagaatcataa |
26005252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 15228843 - 15228913
Alignment:
| Q |
123 |
gttgattgtgttgatattcacaaacaaccagcttttgatcatcctttactaaaaaatcataaattacaggt |
193 |
Q |
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| T |
15228843 |
gttgattgtattgatattaataagcaactagcttttgaccatcctttactaaagaatcataagatacaggt |
15228913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 15246877 - 15246944
Alignment:
| Q |
126 |
gattgtgttgatattcacaaacaaccagcttttgatcatcctttactaaaaaatcataaattacaggt |
193 |
Q |
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| T |
15246877 |
gattgtattgatattaataagcaattagcttttgatcatcctttactaaagaatcataagatacaggt |
15246944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 30919892 - 30919856
Alignment:
| Q |
140 |
tcacaaacaaccagcttttgatcatcctttactaaaa |
176 |
Q |
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| T |
30919892 |
tcacaaacaaccagcttttgatcatcctttattaaaa |
30919856 |
T |
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