View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4992_low_3 (Length: 221)
Name: NF4992_low_3
Description: NF4992
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4992_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 2755561 - 2755766
Alignment:
| Q |
1 |
agataagcaaactaaaatcttaccttaatgaaaccaagccttaatgtcacatagtccaactttgtcacagatccataaaattgcttgaaaaatgatttct |
100 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2755561 |
agatatgcacactaaaatcttaccttaatgaaaccaagccttaatgtcacatagtccaactttgtcacagatccataaaattgcttgaaaaatgatttct |
2755660 |
T |
|
| Q |
101 |
gatgnnnnnnnnnnnnnnngttagaaggaataacaatgatgtcaatgaaaacattgtactaaaaccagtaaaatacaagtatctacatataattaaccta |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2755661 |
gatgaaaaaaaacgaaaaagttagaaggaataacaatgatgtcaatgaaaacattgtactaaaaccagtaaaatacaagtatctacatataattaaccta |
2755760 |
T |
|
| Q |
201 |
ccaacc |
206 |
Q |
| |
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|||||| |
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| T |
2755761 |
ccaacc |
2755766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 2747528 - 2747613
Alignment:
| Q |
17 |
atcttaccttaatgaaaccaagccttaatgtcacatagtccaactttgtcacagatccataaaattgcttgaaaaatgatttctga |
102 |
Q |
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|||||||| ||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2747528 |
atcttaccataatgaaaccacgccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctga |
2747613 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 2372827 - 2372928
Alignment:
| Q |
1 |
agataagcaaactaaaatcttaccttaatgaaaccaagccttaatgtcacatagtccaactttgtcacagatccataaaattgcttgaaaaatgatttct |
100 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| | |||||| |
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| T |
2372827 |
agatatgcacactaaaatcttaccttaatgaaaccaagccttaatgccatatagtccaactttgtcatagatccataaaattgcttgaaaatttatttct |
2372926 |
T |
|
| Q |
101 |
ga |
102 |
Q |
| |
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|| |
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| T |
2372927 |
ga |
2372928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 2372970 - 2373014
Alignment:
| Q |
160 |
taaaaccagtaaaatacaagtatctacatataattaacctaccaa |
204 |
Q |
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|||||||||||||||| || || |||||||||||||||||||||| |
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| T |
2372970 |
taaaaccagtaaaatataattaactacatataattaacctaccaa |
2373014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 55322128 - 55322045
Alignment:
| Q |
19 |
cttaccttaatgaaaccaagccttaatgtcacatagtccaactttgtcacagatccataaaattgcttgaaaaatgatttctga |
102 |
Q |
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|||||| ||||||||||||| |||||||| ||||| || | ||||||||||| |||||||||||||||||||| |||| |||| |
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| T |
55322128 |
cttaccgtaatgaaaccaagtcttaatgtgacataatctgattttgtcacagagccataaaattgcttgaaaaaggattgctga |
55322045 |
T |
|
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