View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4993-Insertion-1 (Length: 1035)

Name: NF4993-Insertion-1
Description: NF4993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4993-Insertion-1
NF4993-Insertion-1
[»] chr2 (4 HSPs)
chr2 (259-927)||(5930909-5931574)
chr2 (8-191)||(5931642-5931825)
chr2 (973-1025)||(5930821-5930874)
chr2 (979-1023)||(17267781-17267826)
[»] chr8 (1 HSPs)
chr8 (973-1025)||(32413188-32413241)
[»] chr3 (5 HSPs)
chr3 (979-1023)||(29776359-29776404)
chr3 (973-1025)||(20200721-20200774)
chr3 (973-1025)||(20202903-20202956)
chr3 (979-1023)||(27189117-27189162)
chr3 (973-1025)||(43839180-43839233)
[»] chr5 (2 HSPs)
chr5 (986-1025)||(374666-374706)
chr5 (979-1025)||(4726672-4726719)
[»] chr1 (1 HSPs)
chr1 (980-1025)||(28213451-28213497)
[»] scaffold0024 (1 HSPs)
scaffold0024 (973-1025)||(36922-36975)
[»] chr7 (1 HSPs)
chr7 (979-1023)||(33530144-33530189)
[»] chr6 (2 HSPs)
chr6 (979-1023)||(1944460-1944505)
chr6 (979-1023)||(5545080-5545125)


Alignment Details
Target: chr2 (Bit Score: 630; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 259 - 927
Target Start/End: Complemental strand, 5931574 - 5930909
Alignment:
Q  259 gtctaaaccttaaagaacgaaaagtctaagaccaattagggagtataaaagagacaaaaatgagataattttttatgaatgtattagagcaataatatta 358  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5931574 gtctaaaccttaaagaaccaaaagtctaagaccaattagggagtataaaagagacaaaaatgagataattttttatgaatgtattagagcaataatatta 5931475  T
Q  359 gaaaggaacaaaaatttaatattaatctaaaaatgatagaaaatttgagatttgacttgaaggggagaatgtttattaatgtaggtccatttttcactaa 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5931474 gaaaggaacaaaaatttaatattaatctaaaaatgatagaaaatttgagatttgacttgaaggggagaatgtttattaatgtaggtccatttt-cactaa 5931376  T
Q  459 tgtagatgatgatatataaatgattaggaagaagcaaacatagtattataattaaaaacattataaactgttaatggggtttattctgtttgatgatcaa 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5931375 tgtagatgatgatatataaatgattaggaagaagcaaacatagtattataattaaaaacattataaactgttaatggggtttattctgtttgatgatcaa 5931276  T
Q  559 cctatgtcacccaaaacatggccaagataaaatccaaatggctgctgccttgttttcttgctctgctcccttgctcccaattacctttgaaaaatggcaa 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5931275 cctatgtcacccaaaacatggccaagataaaatccaaatggctgctgccttgttttcttgctctgctcccttgctcccaattacctttgaaaaatggcaa 5931176  T
Q  659 acaaagaagctgaaataagaaacattttggtcaacatgtttcgtacattgttcttctctctctagcaatatacttttcttttgggcgttaagtatacata 758  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  5931175 acaaagaagctgaaataagaaacattttggtcaacatgtttcgtacattgttcttctctctctagcaatatgcttttcttttgggggttaagtatacata 5931076  T
Q  759 catttgaaaagggacacatatggaaaaacccttttgattactaattattatgattagcgacactctcgacctttcttcctcattaattagtcttattcat 858  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5931075 catttgaaaagggacacatatggaaaaacccttttgattactaattattatgattagcgacactctcaacctttcttcctcattaattagtcttattcat 5930976  T
Q  859 gcatacaaaccagattgattaagagatgggctccacactatattattctgtttggtttgcctccttctt 927  Q
    || |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  5930975 gcctacaaaccagattgattaagagatgggctccacac--tattattctgtttggtttgcctccttctt 5930909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 155; E-Value: 9e-82
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 5931825 - 5931642
Alignment:
Q  8 ttattcacatcctaaatataggtacctcaaaattttgcccactagatattatgctcctgtaggtacagttctattgattgaatgcaatttgtcacatatt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5931825 ttattcacatcctaaatataggtacctcaaaattttgcccactagatattatgctcctgtaggtacagttttattgattgaatgcaatttgtcacatatt 5931726  T
Q  108 ttgtcttttaagnnnnnnnatccaaaactatggctattacataaaattttccttttatacccttaattataaagataaacatac 191  Q
    ||||||||||||       |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5931725 ttgtcttttaagtttttttatccaaaactatggctgttacataaaattttccttttatacccttaattataaagataaacatac 5931642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 973 - 1025
Target Start/End: Complemental strand, 5930874 - 5930821
Alignment:
Q  973 ttttataaaatatatgatattcatttattc-aattgatagagtacattgatata 1025  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5930874 ttttataaaatatatgatattcatttattcaaattgatagagtacattgatata 5930821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 979 - 1023
Target Start/End: Original strand, 17267781 - 17267826
Alignment:
Q  979 aaaatatatgatattcatttattcaa-ttgatagagtacattgata 1023  Q
    |||||| | ||||||||||||||||| |||||||||||||||||||    
T  17267781 aaaataaacgatattcatttattcaaattgatagagtacattgata 17267826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 973 - 1025
Target Start/End: Complemental strand, 32413241 - 32413188
Alignment:
Q  973 ttttataaaatatatgatattcatttattc-aattgatagagtacattgatata 1025  Q
    |||||||||||| |||||||||||| |||| |||||||||||||||||||||||    
T  32413241 ttttataaaataaatgatattcattcattcaaattgatagagtacattgatata 32413188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 979 - 1023
Target Start/End: Original strand, 29776359 - 29776404
Alignment:
Q  979 aaaatatatgatattcatttattc-aattgatagagtacattgata 1023  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||    
T  29776359 aaaataaatgatattcatttattcaaattgatagagtacattgata 29776404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 973 - 1025
Target Start/End: Original strand, 20200721 - 20200774
Alignment:
Q  973 ttttataaaatatatgatattcatttattcaa-ttgatagagtacattgatata 1025  Q
    ||||| |||||| | |||||||||| |||||| |||||||||||||||||||||    
T  20200721 ttttacaaaataaaagatattcattcattcaaattgatagagtacattgatata 20200774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 973 - 1025
Target Start/End: Original strand, 20202903 - 20202956
Alignment:
Q  973 ttttataaaatatatgatattcatttattcaa-ttgatagagtacattgatata 1025  Q
    ||||| |||||| | |||||||||| |||||| |||||||||||||||||||||    
T  20202903 ttttacaaaataaaagatattcattcattcaaattgatagagtacattgatata 20202956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 979 - 1023
Target Start/End: Original strand, 27189117 - 27189162
Alignment:
Q  979 aaaatatatgatattcatttattc-aattgatagagtacattgata 1023  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||    
T  27189117 aaaataaatgatattcatttattcaaattgatatagtacattgata 27189162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 973 - 1025
Target Start/End: Original strand, 43839180 - 43839233
Alignment:
Q  973 ttttataaaatatatgatattcatttattc-aattgatagagtacattgatata 1025  Q
    ||||| |||||| |||||||||||| |||| |||||||||||||||| ||||||    
T  43839180 ttttacaaaatagatgatattcattcattcaaattgatagagtacatcgatata 43839233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 986 - 1025
Target Start/End: Complemental strand, 374706 - 374666
Alignment:
Q  986 atgatattcatttattcaatt-gatagagtacattgatata 1025  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  374706 atgatattcatttattcaatttgatagagtacattgatata 374666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 979 - 1025
Target Start/End: Original strand, 4726672 - 4726719
Alignment:
Q  979 aaaatatatgatattcatttattcaa-ttgatagagtacattgatata 1025  Q
    |||||| |||||||||||| |||||| |||||||||||||||||||||    
T  4726672 aaaataaatgatattcattcattcaaattgatagagtacattgatata 4726719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 980 - 1025
Target Start/End: Complemental strand, 28213497 - 28213451
Alignment:
Q  980 aaatatatgatattcatttattc-aattgatagagtacattgatata 1025  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  28213497 aaataaatgatattcatttattcaaattgataaagtacattgatata 28213451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 973 - 1025
Target Start/End: Complemental strand, 36975 - 36922
Alignment:
Q  973 ttttataaaatatatgatattcatttattcaa-ttgatagagtacattgatata 1025  Q
    ||||| |||||| | |||||||||| |||||| |||||||||||||||||||||    
T  36975 ttttacaaaataaaagatattcattcattcaaattgatagagtacattgatata 36922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 979 - 1023
Target Start/End: Original strand, 33530144 - 33530189
Alignment:
Q  979 aaaatatatgatattcatttattcaa-ttgatagagtacattgata 1023  Q
    |||||||||||||| |||| |||||| |||||||||||||||||||    
T  33530144 aaaatatatgatatgcattcattcaaattgatagagtacattgata 33530189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 979 - 1023
Target Start/End: Complemental strand, 1944505 - 1944460
Alignment:
Q  979 aaaatatatgatattcatttattcaa-ttgatagagtacattgata 1023  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||    
T  1944505 aaaataaatgatattcatttatccaaattgatagagtacattgata 1944460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 979 - 1023
Target Start/End: Complemental strand, 5545125 - 5545080
Alignment:
Q  979 aaaatatatgatattcatttattcaa-ttgatagagtacattgata 1023  Q
    |||||| |||||||||||| |||||| |||||||||||||||||||    
T  5545125 aaaataaatgatattcattcattcaaattgatagagtacattgata 5545080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University