View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4993-Insertion-3 (Length: 484)
Name: NF4993-Insertion-3
Description: NF4993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4993-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 397
Target Start/End: Complemental strand, 40039756 - 40039374
Alignment:
| Q |
8 |
gtggaaagtttgtgaagacagcgaagttcgtatatttaagtggtttggaagaaaatatatccgctaagggaaaaatataagactacatcatatcagaaag |
107 |
Q |
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| T |
40039756 |
gtggaaagtttgtgaagacagcgaagttcgtatatataagtggtttggaagaaaatatatccgctaagggaaaaatataagactacatcat--cagaaag |
40039659 |
T |
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| Q |
108 |
ggtattcatcatccaaacttttaattgtgnnnnnnnnnnngtaacatagacctctgaattgtaaataaaaactctagagtcctattatggatagcagagt |
207 |
Q |
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| T |
40039658 |
ggtactcattatccaaacttttaattgtgtttatttt---gtaacatagacctctgaattgtaaataaaaactctagagtcctattaaggatagcagagt |
40039562 |
T |
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| Q |
208 |
gtattatgagtgtaatttgaagtagnnnnnnntttaatgtctcgtatcttttagtttacacaccttattagttttcaacatcatatargtggtcttttat |
307 |
Q |
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| T |
40039561 |
gtattatgagtgtaatttgaagtagaaaaaagtt-aatgtctcgtatcttttagtttacacaccttattacttttcaacatcatataagtggtctttcat |
40039463 |
T |
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| Q |
308 |
cctcccttttctatacaccaagagttttattttgttaatagaaaactttttctcttctccctcttttgattcgacgcacttttgaattac |
397 |
Q |
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| T |
40039462 |
cctcccttttctatacaccaagagttttattctgtt-atagaaaactttctctcttctccctcttttgattcgacgcacttttgaattac |
40039374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 399 - 481
Target Start/End: Complemental strand, 40039349 - 40039267
Alignment:
| Q |
399 |
ataatttttcccttataggtaatttagtctcttcaaaataactgtcctttttaaaaaatttaatctctccaaagaaacgttgt |
481 |
Q |
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| T |
40039349 |
ataatttttcccttataagaaatttagtctcttcaaaataactgtcctttttaaaaaatttagtctctccaaagaaatgttgt |
40039267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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