View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4993-Insertion-4 (Length: 206)

Name: NF4993-Insertion-4
Description: NF4993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4993-Insertion-4
NF4993-Insertion-4
[»] chr6 (15 HSPs)
chr6 (7-206)||(26828599-26828798)
chr6 (21-100)||(26641207-26641286)
chr6 (21-100)||(26747173-26747252)
chr6 (98-188)||(26640914-26641006)
chr6 (98-188)||(26746880-26746972)
chr6 (21-90)||(26890864-26890933)
chr6 (98-130)||(26853950-26853982)
chr6 (103-142)||(27652025-27652064)
chr6 (93-143)||(27422372-27422422)
chr6 (109-143)||(27713841-27713875)
chr6 (98-148)||(31289527-31289577)
chr6 (98-142)||(26631735-26631779)
chr6 (98-142)||(26737710-26737754)
chr6 (98-130)||(26966392-26966424)
chr6 (102-130)||(27713930-27713958)
[»] chr8 (1 HSPs)
chr8 (98-144)||(29269792-29269838)
[»] scaffold0349 (2 HSPs)
scaffold0349 (109-143)||(18069-18103)
scaffold0349 (102-130)||(17986-18014)
[»] scaffold0003 (1 HSPs)
scaffold0003 (93-143)||(64941-64991)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 26828798 - 26828599
Alignment:
Q  7 acatagattgtgatttgtgaggaaccatctttcaatatcacagtatgtacaaacacttgtattcctaaaggcaatttaatcatatgtacatgagccatac 106  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26828798 acatagattgtgatttgtgaggaactatctttcaatatcacagtatgtacaaacacttgtattcctaaaggcaatttaatcatatgtacatgagccatac 26828699  T
Q  107 agtgttgttgctgctacacaagttgtgtctcagaaaatctgatccttatctgatttactctttccgtacggattggtgaaaacctcgtcctcctccatgc 206  Q
    || ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26828698 agcgttattgcttctacacaagttgtgtctcagaaaatctgatccttatctgatttactctttccgtatggattggtgaaaacctcgtcctcctccatgc 26828599  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 26641286 - 26641207
Alignment:
Q  21 ttgtgaggaaccatctttcaatatcacagtatgtacaaacacttgtattcctaaaggcaatttaatcatatgtacatgag 100  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||||||||||  ||||||||||||||| |||||||    
T  26641286 ttgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaatcaatttaatcatatgaacatgag 26641207  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 26747252 - 26747173
Alignment:
Q  21 ttgtgaggaaccatctttcaatatcacagtatgtacaaacacttgtattcctaaaggcaatttaatcatatgtacatgag 100  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||||||||||  ||||||||||||||| |||||||    
T  26747252 ttgtgatgaaccatctgtcaatatcacagtatgtagaaacacttgtattcctaaaatcaatttaatcatatgaacatgag 26747173  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 26641006 - 26640914
Alignment:
Q  98 gagccatacagtgttgttgctgctacacaagttgtgtctcagaaaatctg--atccttatctgatttactctttccgtacggattggtgaaaa 188  Q
    ||||||||||||||||||||  ||||||||||| ||||||||||| ||||  |||||||||||||||||||| || ||| |||||| ||||||    
T  26641006 gagccatacagtgttgttgcgtctacacaagttctgtctcagaaactctgatatccttatctgatttactctctctgtaaggattgatgaaaa 26640914  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 26746972 - 26746880
Alignment:
Q  98 gagccatacagtgttgttgctgctacacaagttgtgtctcagaaaatctg--atccttatctgatttactctttccgtacggattggtgaaaa 188  Q
    ||||||||||||||||||||  ||||||||||| ||||||||||| ||||  |||||||||||||||||||| || ||| |||||| ||||||    
T  26746972 gagccatacagtgttgttgcgtctacacaagttctgtctcagaaactctgatatccttatctgatttactctctctgtaaggattgatgaaaa 26746880  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 26890933 - 26890864
Alignment:
Q  21 ttgtgaggaaccatctttcaatatcacagtatgtacaaacacttgtattcctaaaggcaatttaatcata 90  Q
    |||||| ||||||||| ||| ||||||| ||||||||||| |||||| || |||| |||| |||||||||    
T  26890933 ttgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata 26890864  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 26853982 - 26853950
Alignment:
Q  98 gagccatacagtgttgttgctgctacacaagtt 130  Q
    |||||||||||||||||||||||||||||||||    
T  26853982 gagccatacagtgttgttgctgctacacaagtt 26853950  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 27652025 - 27652064
Alignment:
Q  103 atacagtgttgttgctgctacacaagttgtgtctcagaaa 142  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  27652025 atacagtgttgttgctgctacgcaagttctgtctcagaaa 27652064  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 27422372 - 27422422
Alignment:
Q  93 tacatgagccatacagtgttgttgctgctacacaagttgtgtctcagaaaa 143  Q
    |||| |||||||||||||||||| ||||||| |||||| ||||||| ||||    
T  27422372 tacaagagccatacagtgttgtttctgctactcaagttctgtctcaaaaaa 27422422  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 27713841 - 27713875
Alignment:
Q  109 tgttgttgctgctacacaagttgtgtctcagaaaa 143  Q
    |||||||||||||||||||||| ||||||||||||    
T  27713841 tgttgttgctgctacacaagttctgtctcagaaaa 27713875  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 31289577 - 31289527
Alignment:
Q  98 gagccatacagtgttgttgctgctacacaagttgtgtctcagaaaatctga 148  Q
    |||||||||||||||||| |||||||||| ||| |||||| |||| |||||    
T  31289577 gagccatacagtgttgtttctgctacacaggttctgtctcggaaactctga 31289527  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 26631779 - 26631735
Alignment:
Q  98 gagccatacagtgttgttgctgctacacaagttgtgtctcagaaa 142  Q
    |||||||||| ||||||||| |||||||||||| |||||| ||||    
T  26631779 gagccatacaatgttgttgcagctacacaagttctgtctcggaaa 26631735  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 26737754 - 26737710
Alignment:
Q  98 gagccatacagtgttgttgctgctacacaagttgtgtctcagaaa 142  Q
    |||||||||| ||||||||| |||||||||||| |||||| ||||    
T  26737754 gagccatacaatgttgttgcagctacacaagttctgtctcggaaa 26737710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 26966424 - 26966392
Alignment:
Q  98 gagccatacagtgttgttgctgctacacaagtt 130  Q
    |||||||||||| ||||||||||||||||||||    
T  26966424 gagccatacagttttgttgctgctacacaagtt 26966392  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 130
Target Start/End: Original strand, 27713930 - 27713958
Alignment:
Q  102 catacagtgttgttgctgctacacaagtt 130  Q
    |||||||||||||||||||||||||||||    
T  27713930 catacagtgttgttgctgctacacaagtt 27713958  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 29269792 - 29269838
Alignment:
Q  98 gagccatacagtgttgttgctgctacacaagttgtgtctcagaaaat 144  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||    
T  29269792 gagccatacagtgttgttgctgctacacaagttctgcttcagaaaat 29269838  T

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Target: scaffold0349 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Complemental strand, 18103 - 18069
Alignment:
Q  109 tgttgttgctgctacacaagttgtgtctcagaaaa 143  Q
    |||||||||||||||||||||| ||||||||||||    
T  18103 tgttgttgctgctacacaagttctgtctcagaaaa 18069  T

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Target: scaffold0349; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 130
Target Start/End: Complemental strand, 18014 - 17986
Alignment:
Q  102 catacagtgttgttgctgctacacaagtt 130  Q
    |||||||||||||||||||||||||||||    
T  18014 catacagtgttgttgctgctacacaagtt 17986  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 64991 - 64941
Alignment:
Q  93 tacatgagccatacagtgttgttgctgctacacaagttgtgtctcagaaaa 143  Q
    |||| |||||||||||||||||| ||||||| |||||| ||||||| ||||    
T  64991 tacaagagccatacagtgttgtttctgctactcaagttctgtctcaaaaaa 64941  T

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