View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4993-Insertion-6 (Length: 128)
Name: NF4993-Insertion-6
Description: NF4993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4993-Insertion-6 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 1e-63; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 1e-63
Query Start/End: Original strand, 6 - 128
Target Start/End: Complemental strand, 3564354 - 3564232
Alignment:
| Q |
6 |
cagaattgttcaaagtgcaaataatcattcaaaggcaatgcctgcgctggtacggagaagacagtgtcaaaaacggtgtcgttaagatgttaggctgcaa |
105 |
Q |
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| T |
3564354 |
cagaattgttcaaagtgcaaataatcattcaaaggcaatgcctgcgctggtacggagaagacagtgtcaaaaacggtgtcgttaagatgttaggctgcaa |
3564255 |
T |
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| Q |
106 |
aggttgaaaagaaaatcctgctg |
128 |
Q |
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| T |
3564254 |
aggttgaaaagaaaatcctgctg |
3564232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 3594018 - 3593911
Alignment:
| Q |
6 |
cagaattgttcaaagtgcaaataatcattcaaaggcaatgcctgcgctggtacggagaagacagtgtcaaaaacggtgtcgttaagatgttaggctgcaa |
105 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||||||| | ||||||||| |||||||||| | ||||||||||||||| | ||||| |
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| T |
3594018 |
cagaattgttcaaagtgcaaagaatcattcaaaggcaatgctcgcgctggaatggagaagacggtgtcaaaaatg--gtcgttaagatgttacgttgcaa |
3593921 |
T |
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| Q |
106 |
aggttgaaaa |
115 |
Q |
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| T |
3593920 |
aggttgaaaa |
3593911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 3580106 - 3579999
Alignment:
| Q |
6 |
cagaattgttcaaagtgcaaataatcattcaaaggcaatgcctgcgctggtacggagaagacagtgtcaaaaacggtgtcgttaagatgttaggctgcaa |
105 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||| | ||||| |||||||| |||||||||| ||| ||||||||||||||||||||| |
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| T |
3580106 |
cagaattgttcgaagtgcaaagaatcattcaaaggcaatgctcgtgctggagtggagaagatggtgtcaaaaatggt--cgttaagatgttaggctgcaa |
3580009 |
T |
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| Q |
106 |
aggttgaaaa |
115 |
Q |
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|||||||||| |
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| T |
3580008 |
aggttgaaaa |
3579999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 3571652 - 3571591
Alignment:
| Q |
6 |
cagaattgttcaaagtgcaaataatcattcaaaggcaatgcctgcgctggtacggagaagac |
67 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||||||| | ||||||||| |
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| T |
3571652 |
cagaattgttcaaagtgcaaacaatcattcaaaggcaatgctcgcgctggaatggagaagac |
3571591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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