View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4993_high_1 (Length: 556)
Name: NF4993_high_1
Description: NF4993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4993_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 517; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 9 - 537
Target Start/End: Complemental strand, 41200533 - 41200005
Alignment:
| Q |
9 |
gaagaaaatacagtaagagaaaaacaagcatacaactaaattatcatcatagtttaagacaataacatgcctgagttgcagcaatgcataacaatgatac |
108 |
Q |
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| T |
41200533 |
gaagaaaatacagtaagagaaaaacaagcatacaactaaattatcatcatagtttaagacaataacatgcctgagttgcagcaatgcataacaatgatac |
41200434 |
T |
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| Q |
109 |
taaaatgatttagattaaaagattagagagtgactgtgagaaaacctcatctgatggccttctaaaattgtattatatcctattcatgttcctagaaata |
208 |
Q |
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| T |
41200433 |
taaaatgatttagattaaaagattagagagtgactgtgagaaaacctcatctgatggacttctaaaattgtattatatcctattcatgttcctagaaata |
41200334 |
T |
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| Q |
209 |
acaccatccttgaaaaatgtaccaaactgacatcactaatgataacacaacagaaaaacaccaaagtttactaaatatgcgagttcttcaataatagcat |
308 |
Q |
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| T |
41200333 |
acaccatccttgaaaaatgtaccaaactgacatcactaatgataacacaacagaaaaacaccaaagtttactaaatatgtgagttcttcaataatagcat |
41200234 |
T |
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| Q |
309 |
aatataatcaacctgcataaaatggtattattaccttgtatttttgttcgacttttatcccagaaaatttctaaaaatgtgaatggctagtcctaaaagg |
408 |
Q |
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| T |
41200233 |
aatataatcaacctgcataaaatggtattattaccttgtatttttattcgacttttatcccagaaaatttctaaaaatgtgaatggctagtcctaaaagg |
41200134 |
T |
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| Q |
409 |
ttattaaacaagtttcatgttttctataaccaacctacacaatagcacaatttgttttctataacctataagcatgtatagcggctgatgctgctttgaa |
508 |
Q |
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| T |
41200133 |
ttattaaacaagtttcatgttttctataaccaacctacacaatagcacaatttgttttctataacctataagcatgtatagcggctgatgctgctttgaa |
41200034 |
T |
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| Q |
509 |
atgtaagttgttaaaccttttggcttatt |
537 |
Q |
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| T |
41200033 |
atgtaagttgttaaaccttttggcttatt |
41200005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 347 - 439
Target Start/End: Complemental strand, 41210311 - 41210219
Alignment:
| Q |
347 |
tatttttgttcgacttttatcccagaaaatttctaaaaatgtgaatggctagtcctaaaaggttattaaacaagtttcatgttttctataacc |
439 |
Q |
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| T |
41210311 |
tatttttgtttaactttcatcccaaaaaatttcaaaatatacgaatggctagtcccaaaatgttatttaacaagttccatattttctataacc |
41210219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 41210585 - 41210545
Alignment:
| Q |
57 |
atagtttaagacaataacatgcctgagttgcagcaatgcat |
97 |
Q |
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| T |
41210585 |
atagtttaagacagtaacatgcctgagttgcagcaatgcat |
41210545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 532
Target Start/End: Complemental strand, 41210188 - 41210159
Alignment:
| Q |
503 |
tttgaaatgtaagttgttaaaccttttggc |
532 |
Q |
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| T |
41210188 |
tttgaaatgtaagttgttaaaccttttggc |
41210159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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