View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4993_high_13 (Length: 206)
Name: NF4993_high_13
Description: NF4993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4993_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 31819689 - 31819521
Alignment:
| Q |
17 |
cacagatgtagagagtcttatccttgagggagagatgatgtgacatcttaagtgtgagttaaagtctcacattgaatgtaagtgctgaggttgaacaaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31819689 |
cacagatgtagagagtcttatccttgagggagagatgatgtgacatgctaagtgtgagttaaagtctcacattgaatgtaagtgctgaggttgaacaaca |
31819590 |
T |
|
| Q |
117 |
tataattgagagaacccataannnnnnngtgaaaaggtgatgcgcaactcacttgcatgattgtttttac |
186 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31819589 |
tataattgagagaatccataa-ttttttgtgaaaatgtgatgcgcaactcacttgcatgattgtttttac |
31819521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 17772568 - 17772650
Alignment:
| Q |
55 |
tgtgacatcttaagtgtgagttaaagtctcacattgaatgtaagtgctgaggttgaacaacatataattgagagaacccataa |
137 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||| ||||| | || |||| |||||||||| ||| ||||| ||||| |
|
|
| T |
17772568 |
tgtgatatattaagtgtgagttaaagtctcacatttgatggaagtgttaagattgagcaacatataaatgatagaactcataa |
17772650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 137
Target Start/End: Complemental strand, 45668511 - 45668476
Alignment:
| Q |
102 |
tgaggttgaacaacatataattgagagaacccataa |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45668511 |
tgaggttgaacaacatataattgagagaactcataa |
45668476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 2517474 - 2517422
Alignment:
| Q |
69 |
tgtgagttaaagtctcacattgaatgtaagtgctgaggttgaacaacatataa |
121 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| | | ||||||| |||||||||| |
|
|
| T |
2517474 |
tgtgagttaaagtcccacattgaatgaaagagttaaggttgagcaacatataa |
2517422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 11442859 - 11442928
Alignment:
| Q |
68 |
gtgtgagttaaagtctcacattgaatgtaagtgctgaggttgaacaacatataattgagagaacccataa |
137 |
Q |
| |
|
||||||||||||||| ||| ||| ||| ||| | ||||||||| ||||||| || |||||| |||||||| |
|
|
| T |
11442859 |
gtgtgagttaaagtcccacgttggatggaagagttgaggttgagcaacatacaagtgagaggacccataa |
11442928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 93
Target Start/End: Complemental strand, 44608230 - 44608201
Alignment:
| Q |
64 |
ttaagtgtgagttaaagtctcacattgaat |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
44608230 |
ttaagtgtgagttaaagtctcacattgaat |
44608201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University