View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4993_high_15 (Length: 203)
Name: NF4993_high_15
Description: NF4993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4993_high_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 745497 - 745326
Alignment:
| Q |
14 |
aagaaaataactagtaaaaaaggataattagtcaaatagtgcattctaacttaacaaagatgtacacaatcaaacggaagcaagaaaattgtaacttatc |
113 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
745497 |
aagaaaataactagtaaaaaaagataattagtcaaatagtgcattctaacttaacaaagatgtacacaatcaaacggaagcaagaaaattgtaacttatc |
745398 |
T |
|
| Q |
114 |
atgcatgcaaggatgctttgaacaaaaaatatagaagacaattaataaagtattcaaattaaaccatcttat |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
745397 |
atgcatgcaaggatgctttgaacaaaaaatatagaagacaattaataaaatattcaaattaaaccatcttat |
745326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 51793136 - 51793196
Alignment:
| Q |
81 |
aatcaaacggaagcaagaaaattgtaacttatcatgcatgcaaggatgctttgaacaaaaa |
141 |
Q |
| |
|
||||||| |||||||||||||| |||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
51793136 |
aatcaaatggaagcaagaaaatagtaacttagcatgcatgtaaggatgctttaaacaaaaa |
51793196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University