View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4993_high_4 (Length: 344)
Name: NF4993_high_4
Description: NF4993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4993_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 167 - 328
Target Start/End: Original strand, 22559323 - 22559484
Alignment:
| Q |
167 |
cgacaacactcccactgtcaccgccgccaatgttttctcttgctctcctctcgtctccgccagatctcgtcctcgtcaaatcagttagggttttaacatt |
266 |
Q |
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| T |
22559323 |
cgacagcactcccactgtcaccgccgccaatgttttctcttgctctcctctcgtttccgccagatctcgtcctcgtcaaatcagttagggttttaacatt |
22559422 |
T |
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| Q |
267 |
ttcgttttgttcaattttcttcgatgattttgcaatggatgataatttaccaatgtgatttg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22559423 |
ttcgttttgttcaattttcttcgatgattttgcaatggatgataatttaccaatgtgatttg |
22559484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 22559167 - 22559270
Alignment:
| Q |
11 |
cacagagtaaaaaacaatcgatgtaaattcaaatccacttcacactctcagcaacaacttcaaatcgaagaagaaaactacaatgaaatccatcgtcgat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22559167 |
cacagagtaaaaaacaatcgatgtaaattcaaatccacttcacactctcagcaacaacttcaaatcgaagaagaaaactacaatgaaatccatcgtcgat |
22559266 |
T |
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| Q |
111 |
tcaa |
114 |
Q |
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|||| |
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| T |
22559267 |
tcaa |
22559270 |
T |
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