View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4993_low_12 (Length: 248)
Name: NF4993_low_12
Description: NF4993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4993_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 36188467 - 36188238
Alignment:
| Q |
1 |
aatcataagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatagatgaactaagattttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36188467 |
aatcataagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatagatgaactaagattttgt |
36188368 |
T |
|
| Q |
101 |
attctgtcaaatgcttgtgtttgtattatatccgagacatgtatccattatggtaagatttccctttttcttgcagtaatttcctctgtggttctttaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36188367 |
attctgtcaaatgcttgtgtttgtattatatccgagacatgtatccattatggtaagatttccctttttcttgcagtaatttcctctgtggctctttaaa |
36188268 |
T |
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| Q |
201 |
gggaggggggaattcaccttcctctctaat |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
36188267 |
gggaggggggaattcaccttcctctctaat |
36188238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 36196785 - 36196568
Alignment:
| Q |
1 |
aatcataagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatagatgaactaagattttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196785 |
aatcataagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatagatgaactaagattttgt |
36196686 |
T |
|
| Q |
101 |
attctgtcaaatgcttgtgtttgtattatatccgagacatgtatccattatggtaagattt-ccctttttcttgcagtaatttcctctgtggttctttaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| |
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| T |
36196685 |
attctgtcaaatgcttgtgtttgtattatatccgagacatgtatccattatggtaagatttcccctgtttcttgcagtaatttcgtctgtggttctttaa |
36196586 |
T |
|
| Q |
200 |
agggaggggggaattcac |
217 |
Q |
| |
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|||||||| ||||||||| |
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| T |
36196585 |
agggagggaggaattcac |
36196568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 36209902 - 36209679
Alignment:
| Q |
7 |
aagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatagatgaactaagattttgtattctg |
106 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||| |
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| T |
36209902 |
aagtcgaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttt-gcagttatagatgaactaagattttgtattctg |
36209804 |
T |
|
| Q |
107 |
tcaaatgcttgtgtttgtattatatccgagacatgtatccattatggtaagatttccctt-tttcttgcagtaatttcctctgtggttctttaaagggag |
205 |
Q |
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|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36209803 |
tcaaatgcttgtgtttgtattatgtccgatacatgtatccattatggtaagatttcccttgtttcttgcagtaatttcctctgtggttctttaaagggag |
36209704 |
T |
|
| Q |
206 |
gggggaattcaccttcctctctaat |
230 |
Q |
| |
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|| ||||||||||||||||||||| |
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| T |
36209703 |
ggaagaattcaccttcctctctaat |
36209679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 36198958 - 36198878
Alignment:
| Q |
7 |
aagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatagatgaa |
88 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||||| |||||||||||||| |
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| T |
36198958 |
aagtctaaacatgcacatcctttggaaaacacaatgttggagagattagagattggtaagtgctttt-taggtatagatgaa |
36198878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 36207806 - 36207688
Alignment:
| Q |
7 |
aagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatagatgaactaagattttg-tattct |
105 |
Q |
| |
|
||||||||||||||||||| | | |||||||||||||||||||||||||||||| | | ||| ||||| | | || |||||||||||||||| | |||| |
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| T |
36207806 |
aagtccaaacatgcacatcatatcgaaaacaccatgttggagagattagaggttcacatgtg-atttgttgttgtatatgaactaagattttgtttttct |
36207708 |
T |
|
| Q |
106 |
gtcaaatgcttgtgtttgta |
125 |
Q |
| |
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|| ||||||||||| ||||| |
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| T |
36207707 |
gttaaatgcttgtgcttgta |
36207688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 36184376 - 36184299
Alignment:
| Q |
149 |
tatggtaagatttccctt-tttcttgcagtaatttcctctgtggttctttaaagggaggggggaattcaccttcctct |
225 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||| |||||||| |||||||| ||||||| | |||||||| |
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| T |
36184376 |
tatggtaagatttcacttgtttcttgcagtaatttccactgcggttctttcaagggaggagggaatttaacttcctct |
36184299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 36200944 - 36200857
Alignment:
| Q |
12 |
caaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatagatgaactaagattttgt |
100 |
Q |
| |
|
|||||||||||||| | |||||| ||||||||||||| |||||| |||||| | |||| | ||| ||| |||||||||||||||||||| |
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| T |
36200944 |
caaacatgcacatcatatggaaagcaccatgttggagtgattagtggttgacaggtgc-tgtgttggtgtagatgaactaagattttgt |
36200857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 36214813 - 36214722
Alignment:
| Q |
7 |
aagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagaggttgagaagtgcttttgtaggtatagatgaactaagattttg |
99 |
Q |
| |
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|||||||||||||||| | |||||||||||| ||||||| |||||||||| |||| |||||| ||||| ||||||||| || ||||| |||| |
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| T |
36214813 |
aagtccaaacatgcactttatttggaaaacacaatgttggggagattagagattgacaagtgc-tttgttggtatagatcaattaagactttg |
36214722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 36184622 - 36184500
Alignment:
| Q |
7 |
aagtccaaacatgcacatcgtttggaaaacaccatgttggagagattagag----gttgagaagtgcttttgtaggtatagatgaactaagattttg-ta |
101 |
Q |
| |
|
||||||||||||| | ||| | |||| ||||||||||||||||||||||| ||| | ||||||||| || | | ||||||||||||||||||| | |
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| T |
36184622 |
aagtccaaacatgaatatcatacggaagacaccatgttggagagattagagagaggttcacaagtgcttt-gttgttgtagatgaactaagattttgttt |
36184524 |
T |
|
| Q |
102 |
ttctgtcaaatgcttgtgtttgta |
125 |
Q |
| |
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|||||| ||||||||||| ||||| |
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|
| T |
36184523 |
ttctgttaaatgcttgtgcttgta |
36184500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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