View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4993_low_14 (Length: 227)
Name: NF4993_low_14
Description: NF4993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4993_low_14 |
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| [»] chr2 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 35105804 - 35106029
Alignment:
| Q |
2 |
catcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttg |
101 |
Q |
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||||||||||| ||||||||||||||||||||||| ||| | |||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
35105804 |
catcataaaaaacagggaaaacagtttgtttcaatcttttacggcattcagcaacagtagccatctcttccaaacaccatgttgactcggcatatctttc |
35105903 |
T |
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| Q |
102 |
agagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggca |
201 |
Q |
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|||||||||||||||||||| | ||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35105904 |
agagaagacaacaatagaaacccgagaattttgaattgcttgaagaagttgcggcgaaagggattctcctttctcaagcctttgatcatccttgaaggca |
35106003 |
T |
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| Q |
202 |
aaaataccctttctttttagatgagc |
227 |
Q |
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|||||||||||||||||||||||||| |
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| T |
35106004 |
aaaataccctttctttttagatgagc |
35106029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 35183753 - 35183978
Alignment:
| Q |
2 |
catcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttg |
101 |
Q |
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||||||||||| |||||||||||| |||||||||| | ||| ||||||||||||| ||||||||||||||||| | ||||| || ||||| ||| |
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| T |
35183753 |
catcataaaaaatagggaaaacagtctgtttcaattctgtatgatattcagcaatagtggccatctcttccaaacataatgttgactccgcataattttt |
35183852 |
T |
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| Q |
102 |
agagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggca |
201 |
Q |
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| T |
35183853 |
agagaagacaacaatagaaatccgagaactttgaattgcttgtagaagttgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcg |
35183952 |
T |
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| Q |
202 |
aaaataccctttctttttagatgagc |
227 |
Q |
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| T |
35183953 |
aaaatacccttagttgttagatgagc |
35183978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 2 - 227
Target Start/End: Original strand, 35054891 - 35055116
Alignment:
| Q |
2 |
catcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttg |
101 |
Q |
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||||||||||| ||||||||| |||||||| || | ||| || |||||||| | ||||||||||||||||||||| ||||| ||||||||| ||| |
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| T |
35054891 |
catcataaaaaatagggaaaactgtttgtttgaaatactcacaacaatcagcaattgcagccatctcttccaaacaccaagttgattcggcatatgtttt |
35054990 |
T |
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| Q |
102 |
agagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggca |
201 |
Q |
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|||||||||||||||| |||||| ||| || |||||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||||||||| |
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| T |
35054991 |
agagaagacaacaataaaaattcgcgaatttcgaattgcttgtagaagctgcggtgaaataaattctcctttctcaagacttttgtcatccttgaaggca |
35055090 |
T |
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| Q |
202 |
aaaataccctttctttttagatgagc |
227 |
Q |
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|||||||| |||||| |||||||||| |
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| T |
35055091 |
aaaataccttttcttgttagatgagc |
35055116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 35177756 - 35177980
Alignment:
| Q |
3 |
atcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttga |
102 |
Q |
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|||||||||| ||||||||||||||||| || || | | |||||| ||||||||||||| |||||||||||||| ||||| || |||||||||| |
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| T |
35177756 |
atcataaaaaacagggaaaacagtttgtaagaaattgctacgacattcaacaatagtagccatttcttccaaacaccatgttgactcagcatatctttct |
35177855 |
T |
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| Q |
103 |
gagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaa |
202 |
Q |
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||||||||||| ||||| || | |||| || |||||||||| |||||||| | |||||| ||||||||||||| ||||||| |||||||||||| |||| |
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| T |
35177856 |
gagaagacaacgatagatatccgtgaatttgcaattgcttgtcgaagttgcagcgaaaggcattctcctttctcgagccttttatcatccttgaacgcaa |
35177955 |
T |
|
| Q |
203 |
aaataccctttctttttagatgagc |
227 |
Q |
| |
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||||||| |||||| |||||||||| |
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| T |
35177956 |
aaataccttttcttgttagatgagc |
35177980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 48 - 227
Target Start/End: Original strand, 35169510 - 35169689
Alignment:
| Q |
48 |
ttcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtaga |
147 |
Q |
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|||| |||| |||||||| |||||||||||||| ||||| || |||||||||| |||||||||||||||||||| | |||| || |||||||||| || |
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| T |
35169510 |
ttcaacaatggtagccatttcttccaaacaccatgttgactcagcatatctttctgagaagacaacaatagaaatccgtgaatttgtaattgcttgtcga |
35169609 |
T |
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| Q |
148 |
agttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagc |
227 |
Q |
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| T |
35169610 |
tgttgcgttgaaaagcattctcctttctctagccttttatcatccttgaaggcgaaaacaccctttctagttagatgagc |
35169689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 227
Target Start/End: Complemental strand, 25484514 - 25484341
Alignment:
| Q |
54 |
aatagtagccatctcttccaaacaccacgttgaatcggcata-tctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttg |
152 |
Q |
| |
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||||| |||||| || ||||||||||| |||||| ||||| |||||| ||||| ||||| |||||||| | ||| ||||||||||||||||||||| |
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| T |
25484514 |
aatagcagccatttcatccaaacaccatgttgaagaagcataatctttg-gagaaaacaacgatagaaatgcgtgactgttgaattgcttgtagaagttg |
25484416 |
T |
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| Q |
153 |
cggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagc |
227 |
Q |
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| T |
25484415 |
gggtgaaatggcttctcctttctgtagctgcttgtcatccttgaaggtgaaaataccttttctattgagatgagc |
25484341 |
T |
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