View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4993_low_5 (Length: 335)
Name: NF4993_low_5
Description: NF4993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4993_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 33456109 - 33455798
Alignment:
| Q |
1 |
taatgtttgacatctgatgatgattttgatgatgaaatatgctgctgctgctgctactgtcacgattattatgatgattttttgaatctgttaacatcgt |
100 |
Q |
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| T |
33456109 |
taatgtttgacatctgatgatgattttgatgatgaaatatgctgctgctgctgctactgtcacgattattatgatgattttttgaatctgttaacatcgt |
33456010 |
T |
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| Q |
101 |
ttgtctgtttccgtaccagtcactggaattacctattccatgtggtgcttgtggtgttcttgttgatgccatttgttgtnnnnnnnnnnnnnnnnnttgt |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33456009 |
ttgtctgtttccgtaccagtcactggaattgcctattccatgtggtgcttgtggtgttcttgttgatgccatttgttgttgttgctgctgctgctgctgt |
33455910 |
T |
|
| Q |
201 |
tctaataattcggctgccgaggcgccgtgagggaaattgaacatctcagacaacattccggttgtttcgtaaaccggtagagcttcttgttcttcttcta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33455909 |
tctaataattcggctgccgaggcgccgtgagggaaattgaacatctcggacaacattccggttgtttcgtaaaccggtagagcttcttgttcttcttcta |
33455810 |
T |
|
| Q |
301 |
tgttgcctatta |
312 |
Q |
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|||||||||||| |
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| T |
33455809 |
tgttgcctatta |
33455798 |
T |
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