View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4993_low_7 (Length: 297)
Name: NF4993_low_7
Description: NF4993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4993_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 286
Target Start/End: Complemental strand, 4189967 - 4189694
Alignment:
| Q |
13 |
tcaacaccgacagagattatcagaaccatgacatggcatcaaatgaacaaagaagcaagaaaaagttgaccaacatatgctgatttgtgtaatccacaaa |
112 |
Q |
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| T |
4189967 |
tcaacaccgacagagattatcagaaccatgacatggcatcaaatgaacaaagaagcaagaaaaagttgaccaacatatgctgatttgtgtaatccacaaa |
4189868 |
T |
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| Q |
113 |
tgatagatgattgacaaatatttacatttcattgatcatctattttatttttaacatctataaatcaatcttatttaatcctttgtnnnnnnnnttcacc |
212 |
Q |
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| T |
4189867 |
tgatagatgattgacaaatatttacatttcattgatcatctagtttatttttgacatctataaatcgatcttatttaatcctttgtaaaaaaaattcacc |
4189768 |
T |
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| Q |
213 |
caagtgatgcgcctttccttttgctaggttaaaccggccagatatatcgacaacactacgaatatccttatatt |
286 |
Q |
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| T |
4189767 |
caagtgatgcgcctttccttttgctaggttaaaccggccagatatatcgacaacactacgaatatccttatatt |
4189694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 4183256 - 4182998
Alignment:
| Q |
44 |
catggcatcaaatgaacaaagaagcaagaaaaagttgaccaacatatgctgatttgtgtaatccacaaatgatagat----------------gattgac |
127 |
Q |
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| T |
4183256 |
catggcagaaaatgaacacagaaccaagaaaaatttgaccaagacatgctgatttgtgtaatccctaaatgatagatgaacagatgatagacagatagac |
4183157 |
T |
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| Q |
128 |
aaatatttacatttcattgatcatctattttatttttaacatctataaatcaatcttatttaatcctttgtnnnnnnnnttcacccaagtgatgcgcctt |
227 |
Q |
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| T |
4183156 |
aaataattacatttcatagctcacctcttttatttttaacatctataaatccatcttgcttgatcctttgtacaaaattttcgcccaagcgactctccat |
4183057 |
T |
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| Q |
228 |
tccttttgctaggttaaaccggccagatatatcgacaacactacgaatatccttatatt |
286 |
Q |
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| T |
4183056 |
tcctctggctaggttaaatcggccagatatattgacaaccgtatcaatatccttatatt |
4182998 |
T |
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