View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4993_low_8 (Length: 282)
Name: NF4993_low_8
Description: NF4993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4993_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 15462064 - 15462326
Alignment:
| Q |
1 |
cttttctactattcatctctctcatttcaagcttgaaatttataagtgattgctgaattgcaccatgagttctaaacagccaagcattcagcaggttctt |
100 |
Q |
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| T |
15462064 |
cttttttactattcatctctc--attccaaacttgaaatttagaagttattgctgaattgcaccatgagttctaaacagccaagcattcagcaggttctt |
15462161 |
T |
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| Q |
101 |
tacccaactacaaggccatcatcatcatcaacagcaacagcccctaaaccctcggggactaaacgtccaaccatggacaagatctttggaattagacatt |
200 |
Q |
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|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15462162 |
tacccaactacaaggccatcttcgtcatcaacagcaactgcccctaaaccctcggggactaaacgtccaaccatggacaagatctttggaattagaaatt |
15462261 |
T |
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| Q |
201 |
agaaagtatcagatttaattgcacttttggtcttacaatgatcgtgattgtgcggttttaacccc |
265 |
Q |
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| T |
15462262 |
agaaaatatcagatttaattgcacttttgatctttcaatgatcgtgattgtgcgattttaacccc |
15462326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 15452156 - 15452409
Alignment:
| Q |
1 |
cttttctactattcatctctctcatttcaagcttgaaatttataagtgattgctgaattgcaccatgagttctaaacagccaagcattcagcaggttctt |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
15452156 |
cttttctactattcatctctctcatttcaaacttgaaatttataagttattgctgaattgcaccatgagttctaaacagccaagcactcagcaggttctt |
15452255 |
T |
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| Q |
101 |
tacccaactacaaggccatcatcatcatcaacagcaacagcccctaaaccctcggggactaaacgtccaaccatggacaagatctttggaattagacatt |
200 |
Q |
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| T |
15452256 |
tacccaactacaaggccatcatcgtcatcaactgcaactgcccctaaaccctcgggaactaaacctccaaccatggacaagatcttcgga-------att |
15452348 |
T |
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| Q |
201 |
agaaagtatcagatttaattgcacttttggtcttacaatgatcgtgattgtgcggttttaa |
261 |
Q |
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| T |
15452349 |
agaaaatatcagatttaattgcacttttgttcttccattgaccacgattgtgcggttttaa |
15452409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 15442830 - 15443084
Alignment:
| Q |
14 |
catctctctcatttcaagcttgaaatttataagtgattgctgaattgcaccatgagttctaaacagccaagcattcagcaggttctttacccaactacaa |
113 |
Q |
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||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| | |
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| T |
15442830 |
catctctctcatttcaaagttgaaatttacaagttattgctgaattgcaccatgagttctaaacagccaagcattcagaaagttctttacccaactacta |
15442929 |
T |
|
| Q |
114 |
ggccatcatcatcatcaacagcaaca---gcccctaaaccctcggggactaaacgtccaaccatggacaagatctttggaattagacattagaaagtatc |
210 |
Q |
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| T |
15442930 |
ggccatcatcatcatcctctgcaacaactacctctaaatcaactggaactaaatacccaaccatggacaagatcttcggaattagaaattagaaaatatt |
15443029 |
T |
|
| Q |
211 |
agatttaattgcacttttggtcttacaatgatcgtgattgtgcggttttaacccc |
265 |
Q |
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| T |
15443030 |
tgatttaattgcacttttggtcttccagtgtttgtgattgtgcgattataacccc |
15443084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 15436449 - 15436561
Alignment:
| Q |
8 |
actattcatctctctcatttcaagcttgaaatttataagtgattgctgaattgcaccatgagttctaaacagccaagcattcagcaggttctttacccaa |
107 |
Q |
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||||| ||||||||||||||||| |||||||||||||||| ||| | ||||||||||||||||||||||| |||||||||||| | |||||||| |||| |
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| T |
15436449 |
actatccatctctctcatttcaaacttgaaatttataagttgttggttaattgcaccatgagttctaaacacccaagcattcagaaagttctttatccaa |
15436548 |
T |
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| Q |
108 |
ctacaaggccatc |
120 |
Q |
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| T |
15436549 |
caacaaggccatc |
15436561 |
T |
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