View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4993_low_9 (Length: 268)
Name: NF4993_low_9
Description: NF4993
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4993_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 20358561 - 20358780
Alignment:
| Q |
29 |
aagcaaaggcaagggaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcagtactctttaatattcttcttatgtaaa |
128 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20358561 |
aagcaaaggcaagagaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcagtactctttaatattcttcttatgtaaa |
20358660 |
T |
|
| Q |
129 |
taacttatgagaattgagttttcttgcatgtatttgcttgctatttatatgaatgaaacattatagttgtttgcatttgatctttaccgtcattaatatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20358661 |
taacttatgagaattgagttttcttgcatgtatttgcttgctatttatatgaatgaaatattatagttgtttgcatttgatctttaccgtcattaatatt |
20358760 |
T |
|
| Q |
229 |
ttattaattaatgaaccatt |
248 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
20358761 |
ttattaattaatgaaccatt |
20358780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 29 - 248
Target Start/End: Complemental strand, 20353324 - 20353103
Alignment:
| Q |
29 |
aagcaaaggcaagggaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcagtactctttaatattcttcttatgtaaa |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20353324 |
aagcaaaggcaagggaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcagcactctttaatattcttcttatgtaaa |
20353225 |
T |
|
| Q |
129 |
t-aacttatgagaattgagttttcttgcatgtatttgcttgctatttatatgaatgaaacatt-atagttgtttgcatttgatctttaccgtcattaata |
226 |
Q |
| |
|
| ||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| || | |||||||||||| ||||||||||||| | |
|
|
| T |
20353224 |
taaacttgtgagaattgagttttgttgcatgtatttgcttgctatttataagaatgaaacattgatgtatttttgcatttgatatttaccgtcattagtt |
20353125 |
T |
|
| Q |
227 |
ttttattaattaatgaaccatt |
248 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
20353124 |
ttttattaaataatgaaccatt |
20353103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 5287168 - 5287387
Alignment:
| Q |
29 |
aagcaaaggcaagggaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcagtactctttaatattcttcttatgtaaa |
128 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5287168 |
aagcaaaggcaagagaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcagtactctttaatattcttcttatgtaaa |
5287267 |
T |
|
| Q |
129 |
taacttatgagaattgagttttcttgcatgtatttgcttgctatttatatgaatgaaacattatagttgtttgcatttgatctttaccgtcattaatatt |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5287268 |
taacttatgagaattgagttttcttgcatgtatttgcttgctatttatatgaatgaaatattatagttgtttgcatttgatctttaccgtcattaatatt |
5287367 |
T |
|
| Q |
229 |
ttattaattaatgaaccatt |
248 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5287368 |
ttattaattaatgaaccatt |
5287387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 29 - 248
Target Start/End: Complemental strand, 5281927 - 5281705
Alignment:
| Q |
29 |
aagcaaaggcaagggaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcagtact---ctttaatattcttcttatgt |
125 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5281927 |
aagcaaaggcaatagaggatgccaaagccaagatgctaactaggaggtataaaatcttcattttgcaactcagtactaccctttaatattcttcttatgt |
5281828 |
T |
|
| Q |
126 |
aaataacttatgagaattgagttttcttgcatgtatttgcttgctatttatatgaatgaaacatt-atagttgtttgcatttgatctttaccgtcattaa |
224 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| || |||||||||||||||| |||||||||||| || | |||||||||||| ||||| ||||||| |
|
|
| T |
5281827 |
aaataacttttgagaattgagttttgttgcatata-ttgcttgctatttataagaatgaaacattgatgtatttttgcatttgatatttactgtcattag |
5281729 |
T |
|
| Q |
225 |
tattttattaattaatgaaccatt |
248 |
Q |
| |
|
| ||||||||| |||||||||||| |
|
|
| T |
5281728 |
ttttttattaaataatgaaccatt |
5281705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 5279160 - 5279359
Alignment:
| Q |
29 |
aagcaaaggcaagggaggatgccaaagccaagatgctaacaaggaagtatataatcttca-ttttgcaactcag---tactctttaatattcttcttatg |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
5279160 |
aagcaaaggcaagagaggatgccaaagccaagatgctaacaaggaagtatataatcttcatttttgtaactcagtactactctttaatattcttcttatg |
5279259 |
T |
|
| Q |
125 |
taaataacttat--gagaattgagttttcttgcatgtatttgcttgctatttatatgaatgaaacattatagttgtttgcatttgatctttaccgtcatt |
222 |
Q |
| |
|
|||||||||| | |||||||||||||| ||||||||| |||||||||||||||| ||||||||||| ||| ||||||||||||| |||||||||||| |
|
|
| T |
5279260 |
taaataacttgtgagagaattgagttttgttgcatgta-ttgcttgctatttataacaatgaaacattgaagtggtttgcatttgatatttaccgtcatt |
5279358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 29 - 248
Target Start/End: Original strand, 6236147 - 6236368
Alignment:
| Q |
29 |
aagcaaaggcaagggaggatgccaaagccaagatgctaacaaggaagtatataatcttcattttgcaactcag---tactctttaatattcttcttatgt |
125 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6236147 |
aagcaaaggcaagagaggatgccaaagccaagatgctaacaaggaagtatagaatcttcattttgcaactcagtactactctttaatattcttcttatgt |
6236246 |
T |
|
| Q |
126 |
aaataacttatgagaattgagttttcttgcatgtatttgcttgctatttatatgaatgaaacattatagttgtttgcatttgatctttaccgtcattaat |
225 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||| | |
|
|
| T |
6236247 |
aaataaccggtgagaattgagttttgttgcatgta-ttgcttgctatttataagaatgaaacattgaagtggtttgcatttgatatttaccgtcattagt |
6236345 |
T |
|
| Q |
226 |
attttattaattaatgaaccatt |
248 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
6236346 |
tttttattaaataatgaaccatt |
6236368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University