View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4994-Insertion-4 (Length: 636)

Name: NF4994-Insertion-4
Description: NF4994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4994-Insertion-4
NF4994-Insertion-4
[»] chr5 (7 HSPs)
chr5 (7-201)||(40456640-40456834)
chr5 (8-91)||(40409617-40409700)
chr5 (139-201)||(40482086-40482148)
chr5 (7-106)||(40362906-40363005)
chr5 (541-610)||(40374413-40374482)
chr5 (241-287)||(40363036-40363082)
chr5 (445-500)||(40420474-40420529)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 40456834 - 40456640
Alignment:
Q  7 atatgaattcataaagaagatcgtggaaagggccaatgaagctgaaaatcacatgtgataccaattagtccttgaacaaatgacaacaagaaggaatctt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40456834 atatgaattcataaagaagatcgtggaaagggccaatgaagctgaaaatcacatgtgataccaattagtccttgaacaaatgacaacaagaaggaatctt 40456735  T
Q  107 agggtcagaattccatctctttgctggttatttctgtacatatgtggtttgtaagtggttgaatttggatgtttactttctcttgccagtagatt 201  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40456734 agggtcagaattccatctctttgctggttatttctgtatatatgtggtttgtaagtggttgaatttggatgtttactttctcttgccagtagatt 40456640  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 40409617 - 40409700
Alignment:
Q  8 tatgaattcataaagaagatcgtggaaagggccaatgaagctgaaaatcacatgtgataccaattagtccttgaacaaatgaca 91  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| || | ||||||||    
T  40409617 tatgaattcataaagaagatagtggaaagggccattgaagctgaaaatcacatgtgataccaataagtccatgcagaaatgaca 40409700  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 40482148 - 40482086
Alignment:
Q  139 tctgtacatatgtggtttgtaagtggttgaatttggatgtttactttctcttgccagtagatt 201  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40482148 tctgtatatatgtggtttgtaagtggttgaatttggatgtttactttctcttgccagtagatt 40482086  T

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Target: chr5; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 40362906 - 40363005
Alignment:
Q  7 atatgaattcataaagaagatcgtggaaagggccaatgaagctgaaaatcacatgtgataccaattagtccttgaacaaatgacaacaagaaggaatctt 106  Q
    |||||||| |||||| ||||| ||||||||||||| ||||||| || |||| |||||||||||||||||||||| |||||||| ||| ||||| ||||||    
T  40362906 atatgaatccataaaaaagatagtggaaagggccattgaagctaaatatcaaatgtgataccaattagtccttgcacaaatgataactagaagaaatctt 40363005  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 541 - 610
Target Start/End: Original strand, 40374413 - 40374482
Alignment:
Q  541 cttgacatcttttatgtaccttaagattccttcttgattaacaaagttaccttcaaaattttagttgaaa 610  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||| | |||||||| |||| ||||||    
T  40374413 cttgacatctcttatgtaccttaacattccttcttgattaacaaagtgaacttcaaaactttaattgaaa 40374482  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 40363036 - 40363082
Alignment:
Q  241 taaaaagtagagggaggaagggtcttttgctcatttggcacagttgt 287  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  40363036 taaaaggtagagggaggaagggtcttttgctcatttggcacacttgt 40363082  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 445 - 500
Target Start/End: Complemental strand, 40420529 - 40420474
Alignment:
Q  445 aactaacatcagtgatctacctgcacaagaatatattgtgacacaaaaatacaaaa 500  Q
    |||||| ||||| ||||||| |||||||||| |||||||||||||||| |||||||    
T  40420529 aactaatatcagcgatctacatgcacaagaacatattgtgacacaaaattacaaaa 40420474  T

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