View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4994-Insertion-5 (Length: 534)
Name: NF4994-Insertion-5
Description: NF4994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4994-Insertion-5 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 523; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 8 - 534
Target Start/End: Original strand, 27066617 - 27067143
Alignment:
| Q |
8 |
cagagtaggctttgaattcaccgaatccagccatggatttagtgccgtagctgttgaaggtttgcacaccctcattgttgtttaaggcgtagtttttgaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27066617 |
cagagtaggctttgaattcaccgaatccagccatggatttagtgccgtagctgttgaaggtttgcacaccctcattgttgtttaaggcgtagtttttgaa |
27066716 |
T |
|
| Q |
108 |
actgtcattgtggccggtggagattttgctgtatcttgcgaattcgttgtgtttttcgttgtataaaccgttggagtaattcttgaacgcgtcgattcca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27066717 |
actgtcattgtggccggtggagattttgctgtatcttgcgaattcgttgtgtttttcgttgtataaaccgttggagtaattcttgaacgcgtcgattcca |
27066816 |
T |
|
| Q |
208 |
ttgagtttgtgagttccataggtggtgaaattctctccgaggctgtagaaggtgaaattctggtcagtttcgtagacagtgaaatgtgaggggtcgaaag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27066817 |
ttgagtttgtgagttccataggtggtgaaattctctccgaggctgtagaaggtgaaattctggtcagtttcgtagacagtgaaatgtgaggggtcgaaag |
27066916 |
T |
|
| Q |
308 |
gacgttgttttgtgagttccgggaagcagaagagatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27066917 |
gacgttgttttgtgagttccgggaagcagaagagatgggcggcggagcagaattccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaa |
27067016 |
T |
|
| Q |
408 |
tgtcgcggcttcggtggcgctgagtggtgaggccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattaca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27067017 |
tgtcgcggcttcggtggcgctgagtggtgaggccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattaca |
27067116 |
T |
|
| Q |
508 |
taagcttttggagtgaatgggttttgg |
534 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
27067117 |
taagcttttggagtgaatgggttttgg |
27067143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 340 - 534
Target Start/End: Original strand, 27080633 - 27080827
Alignment:
| Q |
340 |
agatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcgctgagtggtgagg |
439 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||||||||||||||||| ||||||||||| | || | ||||| |||||||||||||||||||| | |
|
|
| T |
27080633 |
agatgggcagccgagcagaactccggcaactttgtggagagtgtgttggctgccgcgtgtttcgcaaaagccgcggtctcggtggcgctgagtggtgatg |
27080732 |
T |
|
| Q |
440 |
ccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtgaatgggttttgg |
534 |
Q |
| |
|
||||| ||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||| || ||||||| | |||||||||||||||| |
|
|
| T |
27080733 |
ccttattgaggatgaatgttggttttggtaacttgtttttgatcactctgtcccaataacgaattgcaaaagctttcgcagtgaatgggttttgg |
27080827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 327 - 532
Target Start/End: Original strand, 27053747 - 27053952
Alignment:
| Q |
327 |
cgggaagcagaagagatgggcggcggagcagaactccggcagctttgtggagagtgtgttggcggccgcgtgttttgtgaatgtcgcggcttcggtggcg |
426 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| ||||||| ||||||||| | |||||||||||| ||||| ||| || | || || ||||||||| |
|
|
| T |
27053747 |
cgggaagcagaagagatgtgcggcagagcagaattccggcaactttgtggataatgtgttggcggcagcgtgcttttcaaaagctgcagcatcggtggcg |
27053846 |
T |
|
| Q |
427 |
ctgagtggtgaggccttagagaggatgaaagatggttttggtaagttgtttttgatcactctatcccaataacgaattacataagcttttggagtgaatg |
526 |
Q |
| |
|
|| |||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||| |||| || ||||||||||||| |
|
|
| T |
27053847 |
ctaagtggtgacgccttggagaggatgaaggatggttttggcaagttgtttttgatcactctgtcccaataccgaattgcatacgcctttggagtgaatg |
27053946 |
T |
|
| Q |
527 |
ggtttt |
532 |
Q |
| |
|
||||| |
|
|
| T |
27053947 |
agtttt |
27053952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University