View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4994-Insertion-6 (Length: 232)
Name: NF4994-Insertion-6
Description: NF4994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4994-Insertion-6 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 44832750 - 44832974
Alignment:
| Q |
8 |
atttcaaccttactaggtcccttcataaccattcttgcatactaaggcacaaagaagagcaaggttgcacgttgcagtgacataatacacgcaacaaaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44832750 |
atttcaaccttactaggtcccttcataaccattcttgcatactaaggcacaaagaagagcaaggttgcacgttgcagtgacataatacacgcaacaaaaa |
44832849 |
T |
|
| Q |
108 |
tatggtaaatcctgatccttcccctatcagcttctgcactcaagcaaacgcacttctcaggaagaatttaactttccaggtacaatccatcattattcaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| |
|
|
| T |
44832850 |
tatggtaaatcctgatccttcccctatcagcttctgtactcaagcaaacgcacttctcaggaagaatttaactttccaggtataatcaataattattcat |
44832949 |
T |
|
| Q |
208 |
tacactaacatttacaattcaatta |
232 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
44832950 |
tacactaacatttacaattcaatta |
44832974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 44868670 - 44868732
Alignment:
| Q |
135 |
cagcttctgcactcaagcaaacgcacttctcaggaagaatttaactttccaggtacaatccat |
197 |
Q |
| |
|
||||||||| |||||| | |||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44868670 |
cagcttctggactcaaaccaacggtcttctcaggaagaatttaaccttccaggtacaatccat |
44868732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 44858067 - 44858121
Alignment:
| Q |
135 |
cagcttctgcactcaagcaaacgcacttctcaggaagaatttaactttccaggta |
189 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
44858067 |
cagcttttgtactcaagcaaacgctcttctcagaaagaatttaaccttccaggta |
44858121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 44844968 - 44845039
Alignment:
| Q |
121 |
gatccttcccctatcagcttctgcactcaagcaaacgcacttctcaggaagaatttaactttccaggtacaa |
192 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||||||| |||||||| ||||| ||||| |||||||||||| |
|
|
| T |
44844968 |
gatccttcccctgctagcttctttactcaaacaaacgctcttctcagaaagaacttaaccttccaggtacaa |
44845039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 44893882 - 44893921
Alignment:
| Q |
151 |
gcaaacgcacttctcaggaagaatttaactttccaggtac |
190 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
44893882 |
gcaaacgctcttctcaggaagaatttaaccttccaggtac |
44893921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 12930640 - 12930587
Alignment:
| Q |
135 |
cagcttctgcactcaagcaaacgcacttctcaggaagaatttaactttccaggt |
188 |
Q |
| |
|
||||||||| |||||||||||||| ||||| || ||||| ||||| |||||||| |
|
|
| T |
12930640 |
cagcttctggactcaagcaaacgcgcttcttagaaagaacttaaccttccaggt |
12930587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University