View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4994_high_5 (Length: 295)
Name: NF4994_high_5
Description: NF4994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4994_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 10 - 278
Target Start/End: Original strand, 27880561 - 27880835
Alignment:
| Q |
10 |
aaatgaactggaacagaaagaaatacagaacaaaccaacgactatgtttctaattccaaacccaaaaccctcaacacaatcaccataaccataacctact |
109 |
Q |
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| T |
27880561 |
aaatgaactggaacagaaagaaatacagaacaaaccaacgactatgtttctaattccaaacccaaaaccctcaacacaatcaccataaccataacctact |
27880660 |
T |
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| Q |
110 |
tcaac------aacaacaacgctaacattcatcattgttcaaaacaaaatcaaaaactgtctcattccaatgttccaatccattgtatcccaatgtctca |
203 |
Q |
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| T |
27880661 |
tcaacaacaacaacaacaacgctaacattcatcattgttcaaaacaaaatcaaaaactgtctcattccaatgttccaatccattgtatcccaatgtctca |
27880760 |
T |
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| Q |
204 |
actctccaaccaccactctcctcaacgcgcgtaccatacacgcacacttcctcaaattcaacctcttcaccaaca |
278 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27880761 |
actctccaactaccactctcctcaacgcgcgtaccatacacgcacacttcctcaaattcaacctcttcaccaaca |
27880835 |
T |
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