View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4994_low_2 (Length: 392)
Name: NF4994_low_2
Description: NF4994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4994_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 12 - 376
Target Start/End: Original strand, 27066258 - 27066622
Alignment:
| Q |
12 |
atcatcaccagaaccagctccatctctgtaattggtgaatttctcttgagcagcaaaacttcctttaccatagttcttgaaagtattctcaggtttgttc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27066258 |
atcatcaccagaaccagctccatctctgtaattggtgaatttctcttgagcagcaaaacttcctttaccatagttcttgaaagtattctcaggtttgttc |
27066357 |
T |
|
| Q |
112 |
aaattcttgctatagcttacgaaagcatctacagcgcttgagcctttttctgaatatccagagaaatcagatttgaagacgttagcatttttcgcatact |
211 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27066358 |
aaattcttactatagcttacgaaagcatctacagcgcttgagcctttttctgaatatccagagaaatcagatttgaagacgttagcatttttcgcatact |
27066457 |
T |
|
| Q |
212 |
gagtgaaaccgttaactgcgtgaatagagtctttgccgtaacttgcgaaactttggttaccggagttaccaccatcgctgtagcttacgaatgattgttc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27066458 |
gagtgaaaccgttaactgcgtgaatagagtctttgccgtaacttgcgaaactttggttaccggagttaccaccatcgctgtagcttacgaatgattgttc |
27066557 |
T |
|
| Q |
312 |
tcttccggtcacggaggctgtgtaggtggtgaattttacgttaggaatgttgctttcttcagagt |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27066558 |
tcttccggtcacggaggctgtgtaggtggtgaattttaggttaggaatgttgctttcttcagagt |
27066622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University