View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4994_low_3 (Length: 384)
Name: NF4994_low_3
Description: NF4994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4994_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 366
Target Start/End: Original strand, 38840174 - 38840519
Alignment:
| Q |
20 |
ttttgtgtctaattcatgtcttaaatttggtaaggaacnnnnnnnnntccaagagcctatataagaggagaaattcacttgatttaatattttattatgg |
119 |
Q |
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| T |
38840174 |
ttttgtgtctaattcatgtcttaaatttggtaaggaacaaaaaaaa-tccaagagcctatataagaggagaaattcacttgatttaatattttattatgg |
38840272 |
T |
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| Q |
120 |
cccaagcccataataaaacacacgcttaaccctaaatcaactatttatcattatagaagctgcgccgtatctttcttccaagttccatctgcttcatttt |
219 |
Q |
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| T |
38840273 |
cccaagcccataataaaacacacgcttaaccctaaatcaactatttatcattatagaagctgcgccgtatctttcttccaagttccatctgcttcatttt |
38840372 |
T |
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| Q |
220 |
cccattcttcttcttccatcaagacatggaagacatgaattatgttagtgttgagtcgttcaatctgaacggtgtttcattcaataccactgttgtatat |
319 |
Q |
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| T |
38840373 |
cccattcttcttcttccatcatgacatggaaaacatgaattatgttagtgttgagtcgttcaatctgaacggtgtttccatcaataccactgttgtatat |
38840472 |
T |
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| Q |
320 |
gatcatgatgtatatggggatgagccgcatgaggttgatgactatat |
366 |
Q |
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| T |
38840473 |
gatcatgatgtatatggggatgagccgcatgaggttgatgactatat |
38840519 |
T |
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