View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4994_low_6 (Length: 249)

Name: NF4994_low_6
Description: NF4994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4994_low_6
NF4994_low_6
[»] chr1 (4 HSPs)
chr1 (19-243)||(4678715-4678938)
chr1 (24-166)||(34466955-34467089)
chr1 (24-205)||(15594859-15595040)
chr1 (119-184)||(52549269-52549334)
[»] chr2 (9 HSPs)
chr2 (24-221)||(16657679-16657876)
chr2 (26-211)||(43625231-43625416)
chr2 (24-184)||(7542072-7542232)
chr2 (19-220)||(14703218-14703419)
chr2 (87-220)||(12234499-12234632)
chr2 (87-206)||(12258806-12258925)
chr2 (24-220)||(16662154-16662350)
chr2 (87-154)||(11999283-11999350)
chr2 (87-154)||(12245631-12245698)
[»] chr7 (20 HSPs)
chr7 (19-216)||(8659177-8659374)
chr7 (19-219)||(8654261-8654461)
chr7 (19-241)||(1301249-1301471)
chr7 (19-219)||(10494531-10494731)
chr7 (19-219)||(13333613-13333813)
chr7 (19-184)||(8667265-8667430)
chr7 (78-202)||(3147092-3147216)
chr7 (24-211)||(17267758-17267945)
chr7 (19-211)||(17260060-17260252)
chr7 (19-220)||(8646687-8646888)
chr7 (44-204)||(27831057-27831217)
chr7 (26-205)||(6789337-6789516)
chr7 (77-219)||(8616492-8616634)
chr7 (135-220)||(8673894-8673979)
chr7 (122-219)||(8585966-8586063)
chr7 (74-206)||(8664159-8664289)
chr7 (87-205)||(8570136-8570254)
chr7 (24-205)||(8545458-8545639)
chr7 (124-220)||(8537846-8537942)
chr7 (119-171)||(8664919-8664971)
[»] chr4 (3 HSPs)
chr4 (19-184)||(9336048-9336213)
chr4 (28-217)||(30775065-30775254)
chr4 (29-184)||(35132303-35132458)
[»] chr5 (1 HSPs)
chr5 (19-204)||(28219744-28219929)
[»] chr8 (1 HSPs)
chr8 (24-220)||(43744626-43744822)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 4678715 - 4678938
Alignment:
Q  19 cttatggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagac 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4678715 cttaaggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgag-tagattctttatttcagggaatagac 4678813  T
Q  119 ttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaaga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4678814 ttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaaga 4678913  T
Q  219 tgcgcgggagtgatattgatgatgt 243  Q
    ||||||||||| |||||||||||||    
T  4678914 tgcgcgggagtaatattgatgatgt 4678938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 34466955 - 34467089
Alignment:
Q  24 ggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttc 123  Q
    |||||||||||||||| |||||||  ||||||||||||||||        |||||| | ||||||||  |||||||||||| | ||| ||| |||||       
T  34466955 ggaggttgagaactgcgtgcgagaatgcaaagaggacactct--------tttgtcgctactgttgaaatagattctttatatgaggtaattgacttcca 34467046  T
Q  124 ttcatctattactcgtgccaagtttgaggaaattaatatggac 166  Q
    ||| || || ||||||||||||||||||||||| |||||||||    
T  34467047 ttcgtcaatcactcgtgccaagtttgaggaaatcaatatggac 34467089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 15595040 - 15594859
Alignment:
Q  24 ggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttc 123  Q
    |||| ||||||||||| ||||| |||||||| |||  |||||||||  |   |||||| ||  |||||||||||| ||||||| | || || ||||| |     
T  15595040 ggagattgagaactgcgtgcgaaagggcaaaaagggtactctcttttactactgtcactaccattgaggtagattgtttatttaacggtattgacttctt 15594941  T
Q  124 ttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtctt 205  Q
    ||||||  |||||||| |||||||||| ||||| || |||||| |||| || || |||||| | |  ||| |||||||||||    
T  15594940 ttcatcggttactcgttccaagtttgaagaaatcaacatggacttttttaaggattgtatgaagatagttgagagttgtctt 15594859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 52549269 - 52549334
Alignment:
Q  119 ttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatg 184  Q
    ||||||||||| || | | | ||||||||||||||||| |||||||||||||| || |||||||||    
T  52549269 ttttcttcatcgatcaatagggccaagtttgaggaaatgaatatggacctttttaaggagtgtatg 52549334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 24 - 221
Target Start/End: Original strand, 16657679 - 16657876
Alignment:
Q  24 ggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttc 123  Q
    |||||||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16657679 ggaggttgagaactgcatgtgagagggcaaagaggacactctcttttgcttttgtcaccactgttgaggtagattctttatttcagggaattgacttttc 16657778  T
Q  124 ttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagatgc 221  Q
    |||||| || || ||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||| ||| ||||||| |||||||||||||||    
T  16657779 ttcatcaatcacccgtgccaagtttgaggaaattaatatggatcttttcaatgagtgtatgaaaactgttgagaattgtcttcgtgattcaaagatgc 16657876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 211
Target Start/End: Complemental strand, 43625416 - 43625231
Alignment:
Q  26 aggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttctt 125  Q
    ||||||||||| || |||||||| | ||| |||||||| ||||| || |   ||| |||| ||||||||||||||||||| |  || || ||||| | ||    
T  43625416 aggttgagaacggcatgcgagagaggaaaaaggacactgtcttttgcttcgttcagcactattgaggtagattctttattccgtggtattgacttctttt 43625317  T
Q  126 catctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgat 211  Q
    |||| || ||||||||||| ||||| ||||| |||||||| ||||||||||||||| || ||||||||||||||||||||| ||||    
T  43625316 catcaatcactcgtgccaaatttgatgaaataaatatggatcttttcaacgagtgtttgaaaactgttaagagttgtcttattgat 43625231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 7542232 - 7542072
Alignment:
Q  24 ggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttc 123  Q
    |||||||||||||||| || ||||||||||| ||  |||| ||||||    ||||  ||||| |||||||||||||||||||||| || || ||||||||    
T  7542232 ggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccactattgaggtagattctttatttcaaggcattgacttttc 7542133  T
Q  124 ttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatg 184  Q
    |||||| || | | | |||||||||||||| || |||||||| ||||| ||||||||||||    
T  7542132 ttcatcgatcaatagggccaagtttgaggagatgaatatggatctttttaacgagtgtatg 7542072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 14703419 - 14703218
Alignment:
Q  19 cttatggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagac 118  Q
    |||| |||| |||||||| || |||||||||||||| || ||||| ||||||    ||||| ||||| ||||||||||| ||||||||||  | || |||    
T  14703419 cttaaggagcttgagaaccgcttgcgagagggcaaaaagaacactttctttccaagttgtcgccactattgaggtagatgctttatttcaatgcattgac 14703320  T
Q  119 ttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaaga 218  Q
    ||||||||||| || | | | ||||||||||| ||||| ||||||||| |||| || |||||| || | | |||| |||||||||||| |||| | ||||    
T  14703319 ttttcttcatcgatcaatagggccaagtttgaagaaatgaatatggacttttttaatgagtgtgtgaagattgttgagagttgtcttattgatgctaaga 14703220  T
Q  219 tg 220  Q
    ||    
T  14703219 tg 14703218  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 220
Target Start/End: Complemental strand, 12234632 - 12234499
Alignment:
Q  87 ttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatgga 186  Q
    |||||||||||||||||||| | || || || ||||||||||| || | | | ||||||||||||||||| |||||||| ||| | |  ||||||||| |    
T  12234632 ttgaggtagattctttatttgaaggcattgatttttcttcatcgatcaatagggccaagtttgaggaaatgaatatggatcttcttattgagtgtatgaa 12234533  T
Q  187 aactgttaagagttgtcttagtgattcaaagatg 220  Q
     | |||| ||||||||||||||||| | ||||||    
T  12234532 gattgttgagagttgtcttagtgatgctaagatg 12234499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 12258806 - 12258925
Alignment:
Q  87 ttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatgga 186  Q
    ||||| |||||||||||| | | || || || |||||| |||| || | ||||||||||||||||||||| ||| |||| |||||||| || || ||| |    
T  12258806 ttgagatagattctttatgtgatggcattgatttttctgcatcaatcaatcgtgccaagtttgaggaaataaatttggaacttttcaatgaatgcatgaa 12258905  T
Q  187 aactgttaagagttgtctta 206  Q
     |||||| ||||||||||||    
T  12258906 gactgttgagagttgtctta 12258925  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 16662154 - 16662350
Alignment:
Q  24 ggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttc 123  Q
    |||||||||||||| | || || | ||| || |||||||||||||||   || |||||| || ||||| | |||| |||||   |||  || ||||| ||    
T  16662154 ggaggttgagaacttcttgtgaaaaggcgaaaaggacactctctttcaaattggtcaccgctattgagattgattatttatacgaggacattgacttctc 16662253  T
Q  124 ttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagatg 220  Q
    | ||||  | ||||||| ||||||||| ||||| ||||||| |||||| |||||||||||| | | |||| |||||||| ||   ||||||||||||    
T  16662254 tacatcactcactcgtgtcaagtttgaagaaatcaatatgggcctttttaacgagtgtatgaagattgttgagagttgttttgtggattcaaagatg 16662350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 11999350 - 11999283
Alignment:
Q  87 ttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaa 154  Q
    |||||||||||||||||||||| || || || ||||||||||| || | ||| || ||||||||||||    
T  11999350 ttgaggtagattctttatttcaaggcattgatttttcttcatccatcaatcgggcaaagtttgaggaa 11999283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 154
Target Start/End: Original strand, 12245631 - 12245698
Alignment:
Q  87 ttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaa 154  Q
    |||||||||||||||||||||| || || || ||||||||||| || | ||| || ||||||||||||    
T  12245631 ttgaggtagattctttatttcaaggcattgatttttcttcatccatcaatcgggcaaagtttgaggaa 12245698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 8659374 - 8659177
Alignment:
Q  19 cttatggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagac 118  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||    
T  8659374 cttaaggaggttgagaactgcctgtgagagggcaaagaggacactctcttttgcttttgtcaccactgttgaggtcgattctttatttcagggaatagac 8659275  T
Q  119 ttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaa 216  Q
    || | |||||  || |||||||||| |||||||||||| |||||||| ||||| || ||||||||| |||||||| ||||||||||||| ||||||||    
T  8659274 ttctgttcattaatcactcgtgccaggtttgaggaaatgaatatggatctttttaatgagtgtatgaaaactgttgagagttgtcttagcgattcaaa 8659177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 8654461 - 8654261
Alignment:
Q  19 cttatggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagac 118  Q
    |||| ||||||||||||||||||| ||||||||||| |||| |||||||||  | |||||||||||||||||||||||| ||||||||  |||||| |||    
T  8654461 cttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttacttttgtcaccactgttgaggtagatgctttatttatgggaatcgac 8654362  T
Q  119 ttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaaga 218  Q
    ||||||||||| || |||||||| || ||||||||||||||||||||| ||||||| ||||||||  | | |||| | |||||||| || ||||||||||    
T  8654361 ttttcttcatcaatcactcgtgctaaatttgaggaaattaatatggactttttcaatgagtgtatcaatattgttgacagttgtctcagagattcaaaga 8654262  T
Q  219 t 219  Q
    |    
T  8654261 t 8654261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 1301471 - 1301249
Alignment:
Q  19 cttatggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagac 118  Q
    |||| |||||||||||| ||| || ||||||||||| |||||||||||||| || || |||||||| |||||||| |||||||||||||||||||| |||    
T  1301471 cttaaggaggttgagaattgcgtgtgagagggcaaaaaggacactctcttttgctttagtcaccaccgttgaggtcgattctttatttcagggaatcgac 1301372  T
Q  119 ttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaaga 218  Q
    || | |||||  || |||||||||||||||||||||||||||||||| ||||| || |||||||   |||| ||| ||||||||||||| |||||||| |    
T  1301371 ttctgttcattaatcactcgtgccaagtttgaggaaattaatatggatctttttaatgagtgtacaaaaaccgttgagagttgtcttagcgattcaaaaa 1301272  T
Q  219 tgcgcgggagtgatattgatgat 241  Q
    |  ||  ||||||||| ||||||    
T  1301271 tatgcatgagtgatatcgatgat 1301249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 10494531 - 10494731
Alignment:
Q  19 cttatggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagac 118  Q
    |||| ||||||||||||||||||| ||||||||||| |||| |||||||||  | ||||||||||| |||||||| ||| ||||||||  |||||| |||    
T  10494531 cttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctctttttcttttgtcaccaccgttgaggtcgatgctttatttatgggaatcgac 10494630  T
Q  119 ttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaaga 218  Q
    ||||||||||| || ||||||||||| ||||||||||||||||| ||| |||||| |||||||||| | | |||| | |||||||| || ||||||||||    
T  10494631 ttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaatattgttgacagttgtctcagggattcaaaga 10494730  T
Q  219 t 219  Q
    |    
T  10494731 t 10494731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 13333613 - 13333813
Alignment:
Q  19 cttatggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagac 118  Q
    |||| ||||||||||||||||||| ||||||| ||| |||| |||||| ||  | ||||||||||||||||| |||||| ||||||||  |||||| |||    
T  13333613 cttaaggaggttgagaactgcctgtgagagggaaaaaaggatactctccttttcttttgtcaccactgttgaagtagatgctttatttatgggaatcgac 13333712  T
Q  119 ttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaaga 218  Q
    ||||||||||| || ||||||||||| ||||||||||||||||| ||| |||||| |||||||||| | | |||| | |||||||| || ||||||||||    
T  13333713 ttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaatattgttgacagttgtctcagggattcaaaga 13333812  T
Q  219 t 219  Q
    |    
T  13333813 t 13333813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 8667430 - 8667265
Alignment:
Q  19 cttatggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagac 118  Q
    |||| ||||||||||||||||||| ||||||||||| |||| ||||||||| || ||||| |||||||||||||||||| ||||||||  |||||| |||    
T  8667430 cttaaggaggttgagaactgcctgtgagagggcaaaaaggatactctcttttgcttttgttaccactgttgaggtagatgctttatttacgggaatcgac 8667331  T
Q  119 ttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatg 184  Q
    |||| |||||| ||||||||||| || ||||||||| |||| |||||| ||||||| |||||||||    
T  8667330 ttttgttcatcaattactcgtgctaaatttgaggaacttaacatggactttttcaatgagtgtatg 8667265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 3147216 - 3147092
Alignment:
Q  78 tcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacga 177  Q
    |||||||  ||||| |||||||||||||||||||| | ||||| | |||||| || ||||||||||||||||||||||| |||||||| |||||||  ||    
T  3147216 tcaccaccattgagatagattctttatttcagggatttgacttattttcatcaatcactcgtgccaagtttgaggaaatcaatatggatcttttcactga 3147117  T
Q  178 gtgtatggaaactgttaagagttgt 202  Q
    |||| ||||||||||||||||||||    
T  3147116 gtgtttggaaactgttaagagttgt 3147092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 211
Target Start/End: Complemental strand, 17267945 - 17267758
Alignment:
Q  24 ggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttc 123  Q
    |||||||||||||||| || || |  ||||| |||||||| |||||||||| ||| |||| ||||||||||||  |||||||| ||||  | || |||||    
T  17267945 ggaggttgagaactgcatgtgaaaaagcaaaaaggacactttctttcgcctctgtgaccaatgttgaggtagacgctttatttaagggtgttgatttttc 17267846  T
Q  124 ttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgat 211  Q
    ||| || || ||||||||||||||||||||||| ||||||||||||||  | ||||| ||||| | |||| |||  ||||||||||||    
T  17267845 ttcgtcaatcactcgtgccaagtttgaggaaatcaatatggacctttttgatgagtgcatggagattgttgagaagtgtcttagtgat 17267758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 17260252 - 17260060
Alignment:
Q  19 cttatggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagac 118  Q
    |||| |||||||||||||||| || || |  ||||| |||||||| ||||| |||| ||| |||| ||||||||||||  |||||||| ||||  |  |     
T  17260252 cttaaggaggttgagaactgcatgtgaaaaagcaaaaaggacactttcttttgcctctgtgaccaatgttgaggtagacgctttatttaagggtgttaat 17260153  T
Q  119 ttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgat 211  Q
    |||||||| || || ||||||||||||||||| ||||| ||||||||||||||  | ||||| ||||| | |||| |||  ||||||||||||    
T  17260152 ttttcttcgtcaatcactcgtgccaagtttgaagaaatcaatatggaccttttttatgagtgcatggagattgttgagaagtgtcttagtgat 17260060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 8646888 - 8646687
Alignment:
Q  19 cttatggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagac 118  Q
    |||| ||||||||||||| || |||||||| ||||| |||||||| ||||| || | |  ||||||  ||||  |||||||||||||| | || || |||    
T  8646888 cttaaggaggttgagaacggcatgcgagagagcaaaaaggacactatcttttgcttcttgcaccaccattgaattagattctttatttaatggcattgac 8646789  T
Q  119 ttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaaga 218  Q
    |||  |||||| || ||||||||||| ||||| | ||| |||||||| || |||| ||| ||| ||||||||||| ||||||||| || |||| | ||||    
T  8646788 tttatttcatcaatcactcgtgccaaatttgacgcaatcaatatggatctgttcatcgaatgtttggaaactgttgagagttgtcataatgatgccaaga 8646689  T
Q  219 tg 220  Q
    ||    
T  8646688 tg 8646687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 204
Target Start/End: Original strand, 27831057 - 27831217
Alignment:
Q  44 gagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgcca 143  Q
    |||| |||||| ||||||||||||||  |  ||| ||| ||| ||||| ||||| | |||||| |||| || ||||| | ||||   || |||||||| |    
T  27831057 gagaaggcaaaaaggacactctctttttctgttgacactactattgagatagatgccttatttgagggcattgacttcttttcaatgatcactcgtgcaa 27831156  T
Q  144 agtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtct 204  Q
    ||||||||||||| ||||||||||||||||| || |||||||| |||||| ||||||||||    
T  27831157 agtttgaggaaatcaatatggaccttttcaatgaatgtatggagactgttgagagttgtct 27831217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 6789516 - 6789337
Alignment:
Q  26 aggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttctt 125  Q
    |||||||||||||| || || ||||| || |||  ||||||||| |   | ||||| ||| |||||||||| |||||||||||||| || |||||   ||    
T  6789516 aggttgagaactgcgtgtgaaagggccaaaagggtactctcttttgttgtcgtcactactattgaggtagactctttatttcagggcatcgacttcattt 6789417  T
Q  126 catctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtctt 205  Q
    ||||  ||||||| ||||||||||||||||| ||||||||  |||| || ||||||||| | || ||| |||||||||||    
T  6789416 catcacttactcgggccaagtttgaggaaatcaatatggatatttttaatgagtgtatgaagaccgttgagagttgtctt 6789337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 219
Target Start/End: Complemental strand, 8616634 - 8616492
Alignment:
Q  77 gtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacg 176  Q
    ||||| ||| ||||| | |||| ||||| | |||| || || || |||||||| || |||||||  |||||||||||||| |||||||||||||| ||||    
T  8616634 gtcactactattgagattgattatttatgtgagggcatcgatttctcttcatcaatcactcgtgttaagtttgaggaaatcaatatggacctttttaacg 8616535  T
Q  177 agtgtatggaaactgttaagagttgtcttagtgattcaaagat 219  Q
    |||||||  | |||||| |||||||| ||| |||||| |||||    
T  8616534 agtgtataaagactgttgagagttgttttaatgattctaagat 8616492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 8673894 - 8673979
Alignment:
Q  135 ctcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagatg 220  Q
    |||||||||||||||||||||| |||||  | ||||||||||||||| ||||||||||| ||| |||||||| |||| | ||||||    
T  8673894 ctcgtgccaagtttgaggaaatcaatatcaatcttttcaacgagtgtttggaaactgttgagaattgtcttattgatgccaagatg 8673979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 8585966 - 8586063
Alignment:
Q  122 tcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagat 219  Q
    |||||||| || || |||| ||||||||||||||| |||||||||||||| || ||||||||  | |||||| ||||||||||||  ||||| |||||    
T  8585966 tcttcatcaatcacgcgtgtcaagtttgaggaaatcaatatggacctttttaatgagtgtataaatactgttgagagttgtcttaccgattctaagat 8586063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 206
Target Start/End: Complemental strand, 8664289 - 8664159
Alignment:
Q  74 tttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttca 173  Q
    |||||||||||| || ||||||||||||| |||||| |  || |||| | || |||  |  |||||||||||| ||| ||||| |||||||| |||||||    
T  8664289 tttgtcaccactattaaggtagattctttgtttcagcgcttaaacttctttttatccttcgctcgtgccaagtatgatgaaatcaatatggatcttttca 8664190  T
Q  174 acgagtgtatggaaactgttaagagttgtctta 206  Q
    ||  |||| ||||||||||| ||||||||||||    
T  8664189 ac--gtgtttggaaactgttgagagttgtctta 8664159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 8570254 - 8570136
Alignment:
Q  87 ttgaggtagattctttatttcagggaatagacttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatgga 186  Q
    ||||| ||||| || ||| | ||||||| |||||   |||||| || || || ||||||||||||||||| |||||| |||| ||  |  ||||||||||    
T  8570254 ttgagctagatgctatatataagggaattgacttcagttcatcaataacccgggccaagtttgaggaaatgaatatgaacctctttgaaaagtgtatgga 8570155  T
Q  187 aactgttaagagttgtctt 205  Q
    ||||||||| |||||||||    
T  8570154 aactgttaatagttgtctt 8570136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 8545639 - 8545458
Alignment:
Q  24 ggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttc 123  Q
    ||||||||||||||||||| |||| |||||| |||||||| || | || |  ||   ||||  ||||  ||||| |||||| ||| || || |||||||     
T  8545639 ggaggttgagaactgcctgtgagaaggcaaaaaggacactttcatacgacactgaggccacaattgacctagatgctttatatcaaggtattgacttttg 8545540  T
Q  124 ttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtctt 205  Q
    |||||  || ||||| |||||||||||| || | ||||||||||| ||  |  |||||||||| ||||||||  ||||||||    
T  8545539 ttcatgcatcactcgggccaagtttgagcaattgaatatggacctctttgaaaagtgtatggacactgttaattgttgtctt 8545458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 8537942 - 8537846
Alignment:
Q  124 ttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagatg 220  Q
    |||||| || ||||| |||||||||||| || | || |||||||| ||  |  |||||||| ||||||||||||||||| ||| |||| | ||||||    
T  8537942 ttcatcaatcactcgggccaagtttgagcaactcaacatggacctctttgaaaagtgtatgaaaactgttaagagttgttttaatgatgctaagatg 8537846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 8664971 - 8664919
Alignment:
Q  119 ttttcttcatctattactcgtgccaagtttgaggaaattaatatggacctttt 171  Q
    |||| |||||| || |||||||| | |||||||||||| ||||||||||||||    
T  8664971 ttttgttcatcaataactcgtgcgaggtttgaggaaatcaatatggacctttt 8664919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 9336048 - 9336213
Alignment:
Q  19 cttatggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagac 118  Q
    |||| ||||||||||||||||||| ||||||||||| |||| ||| ||||| || ||||| |||||||||||||||||| ||||||||  |||||| |||    
T  9336048 cttaaggaggttgagaactgcctgtgagagggcaaaaaggatactgtcttttgcttttgttaccactgttgaggtagatgctttatttatgggaatcgac 9336147  T
Q  119 ttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatg 184  Q
    ||||||||||| || ||||||||||| ||||||||| |||| |||||| ||||||| |||||||||    
T  9336148 ttttcttcatcaatcactcgtgccaaatttgaggaacttaacatggactttttcaatgagtgtatg 9336213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 217
Target Start/End: Complemental strand, 30775254 - 30775065
Alignment:
Q  28 gttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttca 127  Q
    |||||||||||| || || | |||||| ||||||||||| |||   ||| ||||   ||||||| |||||  ||||||||| |  || ||||||||||||    
T  30775254 gttgagaactgcatgtgaaaaggcaaaaaggacactctccttcaagtttctcacatttgttgagatagataatttatttcaagacattgacttttcttca 30775155  T
Q  128 tctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaag 217  Q
    || || ||||||| ||||||||||||||| |||||||||||||| || ||||||||  | |||||| |||||||||||| ||||||||||    
T  30775154 tcaatcactcgtgtcaagtttgaggaaatcaatatggacctttttaatgagtgtatacagactgttgagagttgtcttactgattcaaag 30775065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 35132458 - 35132303
Alignment:
Q  29 ttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttcttcat 128  Q
    ||||||||||||||| |||||||||||||  |||| ||||||    ||||  ||| | |||| ||||||||||||||||| || || || ||||||||||    
T  35132458 ttgagaactgcctgctagagggcaaagagatcactttctttccttgttgttgccaatattgaagtagattctttatttcaaggcattgatttttcttcat 35132359  T
Q  129 ctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatg 184  Q
    | || | ||| ||||||||||||||||| |||   |||||||| || |||||||||    
T  35132358 caatcaatcgcgccaagtttgaggaaatgaatgcagacctttttaatgagtgtatg 35132303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 28219929 - 28219744
Alignment:
Q  19 cttatggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagac 118  Q
    |||| ||||||||||||| || ||| |||| ||||| |||||||| ||||| ||  ||||| ||||  |||||||||||||||||||| | || || ||     
T  28219929 cttaaggaggttgagaacagcgtgcaagagagcaaaaaggacactatcttttgctgttgtcgccaccattgaggtagattctttatttgaaggcattgat 28219830  T
Q  119 ttttcttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtct 204  Q
    || | |||||| ||||||||||| |||||||||||||| |||||||| |||||||| |||||| || |||||||| |||| |||||    
T  28219829 ttcttttcatcaattactcgtgctaagtttgaggaaatcaatatggatcttttcaatgagtgtttgaaaactgttgagaggtgtct 28219744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 220
Target Start/End: Complemental strand, 43744822 - 43744626
Alignment:
Q  24 ggaggttgagaactgcctgcgagagggcaaagaggacactctctttcgcctttgtcaccactgttgaggtagattctttatttcagggaatagacttttc 123  Q
    ||||||||||||| || ||||| || ||||| |||||| | ||||| ||  ||||||||||| |||||||||||||||||||| |||| || || || |     
T  43744822 ggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgaggtagattctttatttgagggcattgatttctt 43744723  T
Q  124 ttcatctattactcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagatg 220  Q
    | || | || |||||| | |||||||||||||| |||||||| || |||||||||||| || ||| |||| |||||||||||| |||| | ||||||    
T  43744722 tacaacaatcactcgtactaagtttgaggaaatcaatatggatctcttcaacgagtgtttgaaaattgttgagagttgtcttactgatgccaagatg 43744626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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