View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4994_low_7 (Length: 248)
Name: NF4994_low_7
Description: NF4994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4994_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 5863798 - 5863575
Alignment:
| Q |
1 |
atatttcatgatcagaaaaaccaaaatctggctcaaggaaacaagcaatatatgacaataatatgttatgatcaatattaggacaatacgaccaggctaa |
100 |
Q |
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| T |
5863798 |
atatttcatgatcagaaacaccaaaatctggctcaaggaaacaagcaatatatgacaataatatgttatgatcaatattaggacaatacgaccaggctaa |
5863699 |
T |
|
| Q |
101 |
ggcccctccatgaccatgatgtggtcctcaaaagaaaactagaagggtattgtggtcctcatcaacatcaacaaaatatcaaaacattggccacaatagg |
200 |
Q |
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| T |
5863698 |
ggcccctccatga------tgtggtcctcaaaagaatactagaagggtattgtggtcctcatcaacatcaataaaatatcaaaacattggccacaatagg |
5863605 |
T |
|
| Q |
201 |
cattaacatgagttttaaggccacaccagt |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5863604 |
cattaacatgagttttaaggccacaccagt |
5863575 |
T |
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