View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4994_low_8 (Length: 248)
Name: NF4994_low_8
Description: NF4994
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4994_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 55939627 - 55939403
Alignment:
| Q |
10 |
aagaaaataacctaataaacc-ataaaacgagacaccatataatttataattaagtgtaatacaactaaaactggatcaaacaatgctacaggtgaagag |
108 |
Q |
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| T |
55939627 |
aagaaaataacctaataaacccataaaacgagacaccatataatttataattaagtgtaatacaactaaaactggattaaacaatgctacaggtgaagag |
55939528 |
T |
|
| Q |
109 |
aagtatcaacaccagagtcatagacattattccatgatgcctgtaggggatttgattgtgagaagaagttcttgaagagtactagggtctcaacagtatc |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
55939527 |
aagtatcaacaccagagtcatagacattattccatgatgcctgcaggggttttgattgtgagcagaagttcttgaagagtactagggtctcaacagtatc |
55939428 |
T |
|
| Q |
209 |
actactactcgtgctagtgctagtg |
233 |
Q |
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||||||||||||||||||||||||| |
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| T |
55939427 |
actactactcgtgctagtgctagtg |
55939403 |
T |
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