View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4995-Insertion-1 (Length: 1002)
Name: NF4995-Insertion-1
Description: NF4995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4995-Insertion-1 |
 | |
|
| [»] scaffold0210 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 8 - 395
Target Start/End: Original strand, 35480282 - 35480669
Alignment:
| Q |
8 |
aaacctacgaattaaaatggaaaatgtttcttcattgataaattcttttctttgcgacatttcgtcgagcacttggtgtaactcttcaaaacgcttcatt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35480282 |
aaacctacgaattaaaatggaaaatgtttcttcattgataaattcttttctttgcgacatttcgtcgagcacttggtgtaactcttcaaaatgcttcatt |
35480381 |
T |
|
| Q |
108 |
ttaccaacaattttaataatctcattgtacacttcgcaacggggtgtgcagttgtttgttttggtgacccttttgaagaatataaacgctggttttcaat |
207 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35480382 |
ttaccaacaattttaataatctcagtgtacacttcgcaacggggtgtgtagttgtttgttttggtgacccttttcaagaatataaacgctggttttcaat |
35480481 |
T |
|
| Q |
208 |
tggaccgatgtcgttgcaaaacttcgaggacgaggttgctgtcggggtggattctggtgagattaagagctcgttcaattgttctgtgggtttgtctctg |
307 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
35480482 |
tggatcgatgtcgttgcaaaacttcgaggacgaggttgctgtcggggtggattccagtgagattaaaagctcgttcaattgttctttgggtttgtctctg |
35480581 |
T |
|
| Q |
308 |
cagaattattttgtggggtgaagagaagagaagaagaaatgaggtttattagattgaaggaacacaataacacttgaattgagtcttt |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35480582 |
cagaattattttgtggggtgaagagaagagaagaagaaatgatgtttattagattgaaggaacacaataacacttgaattgagtcttt |
35480669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 490 - 1001
Target Start/End: Original strand, 35480757 - 35481281
Alignment:
| Q |
490 |
gtatctgaacataacataagcataagctacacttaatgttggcatcttgtttttatggtatctgatcttctctttggccataagctctaagattacacaa |
589 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35480757 |
gtatcagaacataacataagcataagctacacttaatgttggcatcttgtttttatggtatctgatcttctctttggccataagctctaagattacacaa |
35480856 |
T |
|
| Q |
590 |
gtccacgaaagagcttctgcactacagaatgcaactcaaacttacaaatcataatccc-nnnnnnnnncttacaattcatcatgcatctttctcgttctc |
688 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
35480857 |
gtccacgaaagagcttctacactacagaatgcaactcaaacttacaaatcataatcccaaaaaaaaaacttacaattcatcatgcatccttctcgttctc |
35480956 |
T |
|
| Q |
689 |
aacatataaaattaactcctattagtccagaatcaggataaatttggcataaactgtcgcatac-----acacattaaagaaccaaaggcaaaacaaaga |
783 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||| ||||||||| |
|
|
| T |
35480957 |
aacatataaaattaactcctattagtccagaatcaggataaatttggcataaactgtgccatacagtcgacacactactgaaccaaaggc-aaacaaaga |
35481055 |
T |
|
| Q |
784 |
tgactaaactgaacagatagatgtttcaactttcaatgcaataattggctatattattcacctttaaccatgtaaagataacatacaagctatagagaaa |
883 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35481056 |
tgactaaactgaacagatagatg-------tttcaatgcaataattggctatattattcacctttaaccatgtaaagataacgtacaagctatagagaaa |
35481148 |
T |
|
| Q |
884 |
--caaaatgatcaagtccttctattaagtaggc-aagcaaa--gatattgcaactaa---ccaattaat-aagag-catattccgcaggacc--aaaaaa |
971 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||||| ||||| |||||||||||||||| |||||| |
|
|
| T |
35481149 |
acaaaaatgatcaagtccttctattaagtaggcaaagcaaaagaatattgcaactaaacccaaattaataaagagccatattccgcaggacccaaaaaaa |
35481248 |
T |
|
| Q |
972 |
c-aaggtaaggaagaa--gggaaagagattgaa |
1001 |
Q |
| |
|
| |||||||||||||| || |||||||||||| |
|
|
| T |
35481249 |
caaaggtaaggaagaaagggaaaagagattgaa |
35481281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 423
Target Start/End: Original strand, 28087202 - 28087616
Alignment:
| Q |
8 |
aaacctacgaattaaaatggaaaatgtttcttcattgataaattcttttctttgcgacatttcgtcgagcacttggtgtaactcttcaaaacgcttcatt |
107 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28087202 |
aaacctacgaattaaaatgaaaaatgtttcttcattgataaattattttctttgtgacatttcgtcgagcacttggtgtaactcttcaaaacgcttcatt |
28087301 |
T |
|
| Q |
108 |
ttaccaacaattttaataatctcattgtacacttcgcaacggggtgtgcagttgtttgttttggtgacccttttgaagaatataaacgctggttttcaat |
207 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| |||| ||||||| ||||||| ||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
28087302 |
ttaccaagaatgttaataatctcattgtacacttcacaactgggtgtgtagttgttggttttggtgacccatttgaagaatataaacgctggtttccaat |
28087401 |
T |
|
| Q |
208 |
tggaccgatgtcgttgcaaaacttcgaggacgaggttgctgtcggggtggattctggtgagattaagagctcgttc-aattgttctgtgggtttgtctct |
306 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||||||||| ||||| |
|
|
| T |
28087402 |
cggaccgatgccgttgcaaaagttcgaggacgaggttgctgtcgggatggattccggtgagattaagagctcgttcgatttgttctgtgggtttatctct |
28087501 |
T |
|
| Q |
307 |
gcagaattattttgtggggtgaagagaagagaagaagaaatgaggtttattagattgaaggaacacaataacacttgaattgagtc-tttaatcttaacc |
405 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| ||||||||| ||| |
|
|
| T |
28087502 |
gcggaatatttttgtggggtgaagagaagagaagaagaaatga---ttattagattgaaggaatacaataacacttaaattgagtcttttaatcttgacc |
28087598 |
T |
|
| Q |
406 |
actgatttaatcctaagg |
423 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
28087599 |
actgatttaaccctaagg |
28087616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 332 - 421
Target Start/End: Complemental strand, 44255754 - 44255664
Alignment:
| Q |
332 |
gaagagaagaagaaatgaggtttattagattgaaggaacacaataacacttgaattgagtctt-taatcttaaccactgatttaatcctaa |
421 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||| |||||||| | || |||||||| |||||| |||||| |||||||||||| |
|
|
| T |
44255754 |
gaagagaagaagaaataaggtttattagaatgaaggaacaaaataacaccttaactgagtcttaaaatctttaccactaatttaatcctaa |
44255664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 7e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 7e-92
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 25711417 - 25711724
Alignment:
| Q |
8 |
aaacctacgaattaaaatggaaaatgtttcttcattgataaattcttttctttgcgacatttcgtcgagcacttggtgtaactcttcaaaacgcttcatt |
107 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||| |||| ||||||| |
|
|
| T |
25711417 |
aaacctacgaattaaaatgcaaaatgtttcttcattaataaattcttttctttgcgacatttcatcaagcacttggtgtaactcttcgaaacacttcatt |
25711516 |
T |
|
| Q |
108 |
ttaccaacaattttaataatctcattgtacacttcgcaacggggtgtgcagttgtttgttttggtgacccttttgaagaatataaacgctggttttcaat |
207 |
Q |
| |
|
||||| | ||| || |||||||| |||||||||||||||| ||||||| ||||||| ||||||| ||||| |||||||||||||||||||||||| |||| |
|
|
| T |
25711517 |
ttaccgagaatgttgataatctcgttgtacacttcgcaactgggtgtgtagttgttggttttggagacccatttgaagaatataaacgctggtttccaat |
25711616 |
T |
|
| Q |
208 |
tggaccgatgtcgttgcaaaacttcgaggacgaggttgctgtcggggtggattctggtgagattaagagctcgttc-aattgttctgtgggtttgtctct |
306 |
Q |
| |
|
||| ||||| ||||||||||||| |||||| |||||| ||| |||||| |||| |||| ||||||||| |||| | ||||||||||||||||||||| |
|
|
| T |
25711617 |
cggaacgatgccgttgcaaaacttggaggacaaggttgttgttggggtgaattccaatgaggttaagagcttgttcgatttgttctgtgggtttgtctct |
25711716 |
T |
|
| Q |
307 |
gcagaatt |
314 |
Q |
| |
|
|| ||||| |
|
|
| T |
25711717 |
gcggaatt |
25711724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 12 - 314
Target Start/End: Complemental strand, 32882882 - 32882579
Alignment:
| Q |
12 |
ctacgaattaaaatggaaaatgtttcttcattgataaattcttttctttgcgacatttcgtcgagcacttggtgtaactcttcaaaacgcttcattttac |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
32882882 |
ctacgaattaaaatgtaaaatgtttcttcattaataaattcttttctttgcgacatttcatcaagcacttggtgtaactcttcgaaacacttcattttac |
32882783 |
T |
|
| Q |
112 |
caacaattttaataatctcattgtacacttcgcaacggggtgtgcagttgtttgttttggtgacccttttgaagaatataaacgctggttttcaattgga |
211 |
Q |
| |
|
| ||| || |||||||| |||||||||||||||| ||||||| ||||||| ||||||| ||||| |||||||||||||||||||||||| |||| ||| |
|
|
| T |
32882782 |
tgagaatgttgataatctcgttgtacacttcgcaactgggtgtgtagttgttggttttggagacccatttgaagaatataaacgctggtttccaatcgga |
32882683 |
T |
|
| Q |
212 |
ccgatgtcgttgcaaaacttcgaggacgaggttgctgtcggggtggattctggtgagattaagagctcgttc-aattgttctgtgggtttgtctctgcag |
310 |
Q |
| |
|
||||| ||||| ||||||| |||||| |||||| ||| |||||| |||| ||||| |||||||||||||| | ||||||||||||||||||||||| | |
|
|
| T |
32882682 |
acgatgccgttgtaaaactttgaggacaaggttgttgttggggtgaattccagtgaggttaagagctcgttcgatttgttctgtgggtttgtctctgcgg |
32882583 |
T |
|
| Q |
311 |
aatt |
314 |
Q |
| |
|
|||| |
|
|
| T |
32882582 |
aatt |
32882579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 364 - 423
Target Start/End: Original strand, 35606868 - 35606928
Alignment:
| Q |
364 |
aaggaacacaataacacttgaattgagtcttt-aatcttaaccactgatttaatcctaagg |
423 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
35606868 |
aaggaacataataacacttgtattgagtcttttaatcttaaccactgatttaattctaagg |
35606928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 9e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 22341553 - 22341444
Alignment:
| Q |
20 |
taaaatggaaaatgtttcttcattgataaattcttttctttgcgacatttcgtcgagcacttggtgtaactcttcaaaacgcttcattttaccaacaatt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
22341553 |
taaaatggaaaatgtttcttcattgataaattcttttctttgcgacatttcgtcgagcacttggtgtaactattcaaaacgcttcattttaccaagaatg |
22341454 |
T |
|
| Q |
120 |
ttaataatct |
129 |
Q |
| |
|
|||||||||| |
|
|
| T |
22341453 |
ttaataatct |
22341444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 423
Target Start/End: Complemental strand, 53195831 - 53195745
Alignment:
| Q |
338 |
aagaagaaatgaggtttattagattgaaggaacacaataacacttgaattgagtc-tttaatcttaaccactgatttaatcctaagg |
423 |
Q |
| |
|
||||||||||||||||| || ||| |||| ||| |||||||||| |||||||| ||||||||| |||||| |||||||||||||| |
|
|
| T |
53195831 |
aagaagaaatgaggttttttggatagaagatacagaataacacttatattgagtcttttaatcttgaccactcatttaatcctaagg |
53195745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 322 - 423
Target Start/End: Complemental strand, 39977539 - 39977437
Alignment:
| Q |
322 |
ggggtgaagagaagagaagaagaaatgaggtttattagattgaaggaacacaataacacttgaattgagtc-tttaatcttaaccactgatttaatccta |
420 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| || ||||||||| ||| |||||||||||||| |
|
|
| T |
39977539 |
ggggtgaagagaagagaagaagaaatggggtttattagaccgaaggaacacaataacacttgtattgaatcttttaatcttgaccgctgatttaatccta |
39977440 |
T |
|
| Q |
421 |
agg |
423 |
Q |
| |
|
||| |
|
|
| T |
39977439 |
agg |
39977437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 7e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 328 - 423
Target Start/End: Original strand, 34488322 - 34488418
Alignment:
| Q |
328 |
aagagaagagaagaagaaatgaggtttattagattgaaggaacacaataacacttgaattgagtc-tttaatcttaaccactgatttaatcctaagg |
423 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||| |||||||||||||| |||||||| |||||||| |||| |||||||||||||||| |
|
|
| T |
34488322 |
aagagaatagaagaagaaatgaggtttattagatagaagagacacaataacacttatattgagtcttttaatctcgaccattgatttaatcctaagg |
34488418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 328 - 423
Target Start/End: Original strand, 38230323 - 38230419
Alignment:
| Q |
328 |
aagagaagagaagaagaaatgaggtttattagattgaaggaacacaataacacttgaattgagtc-tttaatcttaaccactgatttaatcctaagg |
423 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| ||||| |||||||||||||| ||||| || |||||| || |||| |||||||||||||||| |
|
|
| T |
38230323 |
aagagaatagaagaagaaatggggtttattagaaagaagggacacaataacacttacattgaatcttttaatgttgaccattgatttaatcctaagg |
38230419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 322 - 421
Target Start/End: Original strand, 37255866 - 37255963
Alignment:
| Q |
322 |
ggggtgaagagaagagaagaagaaatgaggtttattagattgaaggaacacaataacacttgaattgag-tctttaatcttaaccactgatttaatccta |
420 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||||| |||||||||||||||||||| |||||| | |||||| || |||||||||||||||||| |
|
|
| T |
37255866 |
ggggtgaagagaagagaagaagagacggggtttatta---agaaggaacacaataacacttatattgagttttttaattttgaccactgatttaatccta |
37255962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 335 - 406
Target Start/End: Original strand, 19989 - 20060
Alignment:
| Q |
335 |
gagaagaagaaatgaggtttattagattgaaggaacacaataacacttgaattgagtctttaatcttaacca |
406 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||| | |||||||||||||| |||| |
|
|
| T |
19989 |
gagaagaagaaatgaggtttattagacagaagggacacaataacacttataccgagtctttaatcttgacca |
20060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 335 - 406
Target Start/End: Original strand, 27881 - 27952
Alignment:
| Q |
335 |
gagaagaagaaatgaggtttattagattgaaggaacacaataacacttgaattgagtctttaatcttaacca |
406 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||| | |||||||||||||| |||| |
|
|
| T |
27881 |
gagaagaagaaatgaggtttattagacagaagggacacaataacacttataccgagtctttaatcttgacca |
27952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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