View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4995-Insertion-2 (Length: 805)
Name: NF4995-Insertion-2
Description: NF4995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4995-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 15911670 - 15911995
Alignment:
| Q |
8 |
ccactctcatcaattgttagtcacacctttagatccatgttataagttgttcgtttatgctcctaggacggtggttgaggtggttttatcttttaaaccc |
107 |
Q |
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| T |
15911670 |
ccactctcatcaattgttagtcacacctttagatccatgttataagttgttcgtctatgctcctaggacggtggttgaggtggttttatcttttaaaccc |
15911769 |
T |
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| Q |
108 |
gctttagattagattcactcactgtatgggtctctagatttggcgaacgatttttgttctcaattgcattcttttttatataactttagttatgggtttg |
207 |
Q |
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| T |
15911770 |
gctttagattagattcactcactgtatgggtctctagatttggcgaacga-ttttgttctcgattgccttctttgttatgtaactttagttatgggtttg |
15911868 |
T |
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| Q |
208 |
cacgcgttctagttggtgttggttctagtttgcaccccaagggttggtcgagaagtggtggcgtcgctgagggttttgtggttggtggcaacatcggcat |
307 |
Q |
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| T |
15911869 |
cacgtgttctagttggtgttggttctagtttgca-ccgaagggttggtcgataggtggtggcgttgttgagggttctgtggttggtggcagcaccgacat |
15911967 |
T |
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| Q |
308 |
cgttgtgtcaccaacgtcgatttggtgg |
335 |
Q |
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| T |
15911968 |
cgctgtgtcaccaacgtcggtttggtgg |
15911995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 396 - 541
Target Start/End: Original strand, 15912141 - 15912286
Alignment:
| Q |
396 |
tatctccttttttgtttaatataattttcatgttgcttaaaaaacaaaattaaaatcatttcgtgtccttgaaccgtacaaattctaatctttccaatta |
495 |
Q |
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| T |
15912141 |
tatctctttttttgtttaatataattttcatgttgcttaaaaaacaaaattaaaatgatttcgtgtccttgaaccgtacaaattctaatctttccaatta |
15912240 |
T |
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| Q |
496 |
tcatgcaagtggagattagagacacaaatctatttttaatatgctt |
541 |
Q |
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| T |
15912241 |
tcatgcaagtggagattagagacacaaatctatttttaatatgctt |
15912286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 338 - 381
Target Start/End: Original strand, 15912066 - 15912109
Alignment:
| Q |
338 |
acacttagtttgacttataacgattatttatagttgagttgtat |
381 |
Q |
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| T |
15912066 |
acacttagtttgacttataacgattatttatagttgagttgtat |
15912109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 575 - 655
Target Start/End: Original strand, 15912288 - 15912365
Alignment:
| Q |
575 |
aaaaaatctatcattaactattattactatatacacnnnnnnnnntgaattattgacacagacaatctttataatttaatt |
655 |
Q |
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| T |
15912288 |
aaaaaatctatcattaactat-attactatatgcacaaaaaat--tgaattattgacacggacaatctttataatttaatt |
15912365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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