View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4995-Insertion-3 (Length: 666)

Name: NF4995-Insertion-3
Description: NF4995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4995-Insertion-3
NF4995-Insertion-3
[»] chr5 (1 HSPs)
chr5 (15-282)||(14512145-14512410)
[»] chr1 (9 HSPs)
chr1 (64-183)||(14103805-14103924)
chr1 (30-197)||(14092573-14092743)
chr1 (58-238)||(14121644-14121828)
chr1 (483-607)||(14129388-14129508)
chr1 (276-327)||(14121572-14121623)
chr1 (403-473)||(14129575-14129645)
chr1 (490-547)||(14117885-14117942)
chr1 (57-109)||(14080003-14080055)
chr1 (634-666)||(14103362-14103394)


Alignment Details
Target: chr5 (Bit Score: 108; Significance: 7e-54; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 14512410 - 14512145
Alignment:
Q  15 tacacttcgtttgaatattttcaacatcattctaagctttttatttaaagccacttcaactctcttttgcttgacaaagtttcgatgtgggacttgaaac 114  Q
    ||||||||  ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| || |    
T  14512410 tacacttccgttgcatattttcaacatcattctaagctttttatttatagccacttcaactctcttttgcttgccaaagtttcaatgtgggacttcaagc 14512311  T
Q  115 atttgtatt---nnnnnnncactatcaggatgtgggatttctctatagattcgat---atttgcaccaaacatgtagacttctaggactatctatacatt 208  Q
    |||||||||          |||||||| ||||||||||||||||||| ||||  |   |||||||||||||||||||   | ||||||||||||| || |    
T  14512310 atttgtattaaaaaaaaaacactatcatgatgtgggatttctctatatattcactataatttgcaccaaacatgtagcgctttaggactatctatgcact 14512211  T
Q  209 catcatgaacaactttttaacacaatcatccatccaatcaatcagataccattatacaaatgtttataacaaaa 282  Q
    ||| ||||||||||| |||||||| | |||        ||||||||||||||||||||||||||||||||||||    
T  14512210 cataatgaacaacttcttaacacagttatc--------caatcagataccattatacaaatgtttataacaaaa 14512145  T

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Target: chr1 (Bit Score: 83; Significance: 6e-39; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 14103924 - 14103805
Alignment:
Q  64 gccacttcaactctcttttgcttgacaaagtttcgatgtgggacttgaaacatttgtattnnnnnnncactatcaggatgtgggatttctctatagattc 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||       |||||||||||||| ||||||||||||||||||    
T  14103924 gccacttcaactctcttttgcttgacaaagtttcgatgtgggacttgaagcatttgcattaaaaaaacactatcaggatgttggatttctctatagattc 14103825  T
Q  164 gatatttgcaccaaacatgt 183  Q
     |||||||||||||||||||    
T  14103824 aatatttgcaccaaacatgt 14103805  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 30 - 197
Target Start/End: Complemental strand, 14092743 - 14092573
Alignment:
Q  30 tattttcaacatcattctaagctttttatttaaagccacttcaactctcttttgcttgacaaagtttcgatgtgggacttgaaacatttgtattnnnnnn 129  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||| |||| ||  ||| |||||||||||||||||||| |||||||| |          
T  14092743 tattttcaacatcattctaagcttcttatttatagccacttcaactctcctttgtttcccaatgtttcgatgtgggacttgaagcatttgtactaaagaa 14092644  T
Q  130 ncactatcaggatgtgggatttctctatagattcgat---atttgcaccaaacatgtagacttctaggact 197  Q
     |||||||||||||||||| ||| |||||||||| ||   ||||| |||||||||||||| || |||||||    
T  14092643 acactatcaggatgtgggagttccctatagattcaatataatttgaaccaaacatgtagagttttaggact 14092573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 58 - 238
Target Start/End: Complemental strand, 14121828 - 14121644
Alignment:
Q  58 tttaaagccacttcaactctcttttgcttgacaaagtttcgatgtgggacttgaaacatttgtattnnnnnnn-cactatcaggatgtgggatttctcta 156  Q
    |||| |||| ||||||||||| |||||||| ||||||||||||||||||||| || ||||||||||        |||||   |||||| |||||||| ||    
T  14121828 tttatagccccttcaactctcctttgcttgccaaagtttcgatgtgggacttcaagcatttgtattaaaaaaaacactacttggatgttggatttcttta 14121729  T
Q  157 tagattcgatatttgcaccaaacatgt--agactt-ctaggactatctatacattcatcatgaacaactttttaacacaatcatc 238  Q
    ||||||| |||||||||||||||||||  |||||| ||||||||||||||||| |||| || ||||||||||||||||| |||||    
T  14121728 tagattcaatatttgcaccaaacatgtagagacttcctaggactatctatacactcataataaacaactttttaacacagtcatc 14121644  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 483 - 607
Target Start/End: Complemental strand, 14129508 - 14129388
Alignment:
Q  483 tgttagatgaaaagacttttgctatagaatcggtttatggaagagcagggattctttcttagtgggctgatttgattttgaacacaaaagtgatgaggca 582  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||| || || ||||| ||||||||||||      ||||| | ||| ||||||||||    
T  14129508 tgttagctgaaaagacttttgctatagaatcagtttatggaagagcaagggttgtttctcagtgggctgattc-----tgaaccccaaattgatgaggca 14129414  T
Q  583 atgcaagcttgt-ctgtaaactgcat 607  Q
    || ||||||||| |||| ||||||||    
T  14129413 attcaagcttgtcctgtcaactgcat 14129388  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 276 - 327
Target Start/End: Complemental strand, 14121623 - 14121572
Alignment:
Q  276 aacaaaata-cattgtgggtaagagaagagtcacactctgaatgttggaaaaa 327  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  14121623 aacaaaataacattgtgg-taagagaagagtcacactctgaatgttggaaaaa 14121572  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 473
Target Start/End: Complemental strand, 14129645 - 14129575
Alignment:
Q  403 gcaggagcatgcaaagaccaaagaattaaaaggcttcaatgaaagatcaatatactcagtttggtgtggtt 473  Q
    ||||||||||||||||| || |||||| |||||||||| || |||| || | || ||||| ||||||||||    
T  14129645 gcaggagcatgcaaagatcacagaattcaaaggcttcactggaagaccattgtattcagtatggtgtggtt 14129575  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 547
Target Start/End: Complemental strand, 14117942 - 14117885
Alignment:
Q  490 tgaaaagacttttgctatagaatcggtttatggaagagcagggattctttcttagtgg 547  Q
    |||||| |||||| |||||||||| |||||||||||||||  |||| ||||| |||||    
T  14117942 tgaaaaaacttttactatagaatcagtttatggaagagcaaagattgtttctcagtgg 14117885  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 14080055 - 14080003
Alignment:
Q  57 atttaaagccacttcaactctcttttgcttgacaaagtttcgatgtgggactt 109  Q
    ||||| |||| ||||||||||| ||| |||| ||||||| |||||||||||||    
T  14080055 atttatagccccttcaactctcatttccttgccaaagttccgatgtgggactt 14080003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 634 - 666
Target Start/End: Complemental strand, 14103394 - 14103362
Alignment:
Q  634 ttttgctatggtttataccattttgtatttggc 666  Q
    |||||||||| ||||||||||||||||||||||    
T  14103394 ttttgctatgttttataccattttgtatttggc 14103362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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