View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4995_high_13 (Length: 255)
Name: NF4995_high_13
Description: NF4995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4995_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 29208826 - 29209070
Alignment:
| Q |
1 |
ttctgattaaatttccttctcaatcatatatttgtcaatccttattatgttccttcaaatttccacttagcttaagtgagggataatccatggttcacat |
100 |
Q |
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| T |
29208826 |
ttctgattaaatttccttctcaatcatatatttgtcaatccttattatgttccttcaaatttccacttagcttaagtgagggataatccatggttcacat |
29208925 |
T |
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| Q |
101 |
taattaatccaatgtttatttgcatgttgtatttgattctttggagaacactgaggtgtatccgtgtatgttatagttgattggaattcaataattttct |
200 |
Q |
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| T |
29208926 |
taattaatccaatgtttatttgcatgttgtatttgattctttggagaacactgaggtgtatccgtgtatgttatagttgattggaattcaataattttct |
29209025 |
T |
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| Q |
201 |
atgctctattaagttttgttttagaattaatgtttgttgtctctg |
245 |
Q |
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| T |
29209026 |
atgctctattaagttttgttttagaattaatgtttgttgtctctg |
29209070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 38377566 - 38377513
Alignment:
| Q |
1 |
ttctgattaaatttccttctcaatcatatatttgtcaatccttattatgttcctt |
55 |
Q |
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| T |
38377566 |
ttctgattaaatttccttctcaatcatatatttatcaatcc-tattatgttcctt |
38377513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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