View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4995_high_15 (Length: 240)
Name: NF4995_high_15
Description: NF4995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4995_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 34085916 - 34085748
Alignment:
| Q |
1 |
aaagaatgagacaaaccaaattttttgaaggaagacgctatcaccataatcggaaatcaacagtaaagagagaga--ctattttcttttgtaagagttat |
98 |
Q |
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| T |
34085916 |
aaagaatgagacaaaccaaattttttgaaggaagacggtatcaccataatcggaaatcaacagtaaagagagagagactattttcttttgtaagagttat |
34085817 |
T |
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| Q |
99 |
tgattgataacattgtttggattgtctctaagtcgatacgacttctggtttgagcttatgccctctttctata |
171 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34085816 |
tgat----aacattgtttggattgtctctaagtcgatacgacttctggtttgagcttatgccctctttctata |
34085748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 1752801 - 1752837
Alignment:
| Q |
67 |
agagagagactattttcttttgtaagagttattgatt |
103 |
Q |
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| T |
1752801 |
agagagagactattctcttttgtaagatttattgatt |
1752837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 43414261 - 43414221
Alignment:
| Q |
59 |
aacagtaaagagagagactattttcttttgtaagagttatt |
99 |
Q |
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| T |
43414261 |
aacagtaaagagagagactattttcttttgtaagagttatt |
43414221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 2317088 - 2317036
Alignment:
| Q |
52 |
ggaaatcaacagtaaagagagagactatt-ttcttttgtaagagttattgatt |
103 |
Q |
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| T |
2317088 |
ggaattcaaccgtaaagagagagactattcttctcttgtaagagttattgatt |
2317036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 39076754 - 39076690
Alignment:
| Q |
27 |
gaaggaagacgctatcaccataatcggaaatcaacagtaaagagagagactattttcttttgtaa |
91 |
Q |
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|||||||| ||||||||||| || | || |||||||||||||||||||||||| ||| |||||| |
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| T |
39076754 |
gaaggaaggcgctatcaccaaaaatgaaattcaacagtaaagagagagactattctctcttgtaa |
39076690 |
T |
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